Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2682 ATGAGAAACAGAAGTAAGTCGTGTGTAAGAGAGCTTTTGAGGCGTCGCACAGTGAGCAGGAGGGAAGGAGAAACAAAAGAAGCAGTTAAGGTTAAAAAATATGAAACATGGAAGGTTAGCCATGGAACCAACCAGGATAAGAAAGCTTGTGAGGTAACGTTTGAGAATAGAAAAAAGGGGTTAGTGAAGAAAGCTTCTGAGTTTTCCACCCAATGCGGGGTTAATGCCTGCATGATAATCTATGGCCCTAATTTTGAAGGCCAAGCTTTTCAATCTGTAGAAACATGGCCACAAGATCCCAATGAGGTGATGTGCATTATCCATAAGTACAATGCCAAGATCATCGAGCAACAAAAACTGAAGAACTACGATGTGCAAAATTTGTACAAAGATAGGAAGAACATGGTTAACGCTCAGATATCCAACATCTAA 432 0.4051 MRNRSKSCVRELLRRRTVSRREGETKEAVKVKKYETWKVSHGTNQDKKACEVTFENRKKGLVKKASEFSTQCGVNACMIIYGPNFEGQAFQSVETWPQDPNEVMCIIHKYNAKIIEQQKLKNYDVQNLYKDRKNMVNAQISNI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2682 143 SMART madsneu2 13 93 IPR002100 GO:0003677|GO:0046983
Dere04g2682 143 PANTHER MADS BOX PROTEIN 45 122 - -
Dere04g2682 143 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Dere04g2682 143 SUPERFAMILY SRF-like 38 131 IPR036879 GO:0003677|GO:0046983
Dere04g2682 143 Gene3D - 46 136 IPR036879 GO:0003677|GO:0046983
Dere04g2682 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 84 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2682 Dere-ChrDere04 36278731 36279364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2682 52 110 Type I MADS-box Gene Family AT5G55690 48.333 9.74e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere04g2682 SRF-TF 1.1e-13 No_clan