LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2677	ATGAAACGTGGAAGGTTAGCCATGGAACCAATCCAGAATAAGAAAGTTTGTAGGGCAACATTTGAGAATAGGAAAAAGGGTTTAATGAAGAAAGCTTATGAATTTTCCACTCTTTGTGGGGTGGACAGCTGCATGATAATCTATGGCCCTAATTTTGAAGGCCAAGCACCTCAGCCTGCTGAAACATGGCCTCAAAATCCCAGAGAGGTGATGCGTATTATCCATAAGTACAACACCAAGATTGCTGAGCAAAAAAAGCCAAAGAACTACGACGTGCAAGATTTCTTCAAAGATAGGAGGAACAAGGTTGAAGTTGAGATCTCCAAAATCCAAAAGGAAACCCTTAGGATAATGTACCCTACAACCTGGGATAGTGACTATTTCAATGCCCTAGGAGAGGATGATCTAAGAGGGCTTGTAACAAAGCTGGATGCTAAGATTGATGCTTGTAACCAAAGAATCAACATGCTGAACAAACAGAGTTCTTGTCTAAAAGCAGAAGTGTTGCAATCAGAGAAGGCTGTTTCAAATCCTAGAAGCCACCCGATCAATTTTATGCCCTCTCAAGCTCAGCTTTCCTTTGCTCCTATGAAGCCACTTGGTGATTATTATAACCAGATAGCATTTTATCACCCTTCTCCTCTATCTCAGATGTTTCACTGTCCTCAAAATGTCGAAAGTTCCTCACCGTACTGTTACAATGGAAGTGCACATACAATGCAGCCAGATTGGCACTACTCTGCTGCTCTGCAGAATCTACCACCCCTTCCACAATGGTTTCAAACTGATAATGGCTCAGATTCCCTACTACAGCATGAAAAGAAGAATTAA	831	0.4164	MKRGRLAMEPIQNKKVCRATFENRKKGLMKKAYEFSTLCGVDSCMIIYGPNFEGQAPQPAETWPQNPREVMRIIHKYNTKIAEQKKPKNYDVQDFFKDRRNKVEVEISKIQKETLRIMYPTTWDSDYFNALGEDDLRGLVTKLDAKIDACNQRINMLNKQSSCLKAEVLQSEKAVSNPRSHPINFMPSQAQLSFAPMKPLGDYYNQIAFYHPSPLSQMFHCPQNVESSSPYCYNGSAHTMQPDWHYSAALQNLPPLPQWFQTDNGSDSLLQHEKKN	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2677	276	CDD	MADS_SRF_like	2	78	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Dere04g2677	276	SUPERFAMILY	SRF-like	3	99	IPR036879	GO:0003677\|GO:0046983
	Dere04g2677	276	ProSiteProfiles	MADS-box domain profile.	1	51	IPR002100	GO:0003677\|GO:0046983
	Dere04g2677	276	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	181	-	-
	Dere04g2677	276	Coils	Coil	140	167	-	-
	Dere04g2677	276	Gene3D	-	14	102	IPR036879	GO:0003677\|GO:0046983
	Dere04g2677	276	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dere04g2677	276	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dere04g2677	276	SMART	madsneu2	1	62	IPR002100	GO:0003677\|GO:0046983
	Dere04g2677	276	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	51	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2677	Dere-ChrDere04	36173204	36174034	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2677	1	153	Type I MADS-box Gene Family	AT5G55690	35.714	6.53e-19	82.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Dere04g2677		SRF-TF	8.1e-15	No_clan