Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2612 ATGCGGTCATCCAATTTCTCGAGTCGGGTCTCGAGGTTTGCGAGGACTGAAGCGCAGGAAGTACTCCTAGATTATTTTCATTCTACACGGGGCTACAGTTTCGTGGATGCTGAGTACATGAGCAAGAATTCACCACATTTCCTTCAAAGTTTGGTGTTCAGGTTCAATGGCCATGAAGATGTAGCTCGATCTTTGAAAAAGTTCCTCAGGTACAACGCTATTAATGAGTTTGAACCATTCTTTGAGAGTTTGGGTATAAATCCATCAGAGTTGAATTTGGTTCTCCCTCCCGGCATGATGTTTTTGACTGACGATTATGTTATGCTTGAAAATTTTCATGCTTTATGTGATTATGGAGTTCCACGTAATAGAATGGGCAAAATGTATAAGGTGGGAAAAGAAATTTTTGGGTATCGTAGTGGATTGTTGTCTTCGAAATTTCGAGCTTACGAGAATTTGGGTTTGAGTAAATCGACAGTCATCAAGCTTGTTAGTTGTTGTCCTTCACTTCTAATTGGTGATATAAACTGTGAATTTGCCACGGTTCTTGACTGGCTGAAGAGAATAGGGTTTCAAAATGATTGGATTGGAAATTACGTGTCATGTACAAGAACATATAACTGGAAAAAGATGCTTGATACTATAGATTTTCTTCATAATGTGGGTTGCTCTGGGAAACAGTTGCACAACTTGTTTAAGGAAAACCCTGCATTATTATTGGAAGGTTCTGGGAAGAAAGTATACTTATTGGTTCGATTACTTAAGTTGGGTCTCAAGATGAGTGTGTTTTATTCTTCTTTTATACAAAACCCCCAGAATTTGTCTAATAAGTGTGTAAAAAATCTTTTGAGAGTAGTTGACTTTTTGTATAATATTGGAATGGAGTCAGAAGACATTGCATCCATTCTGTCTAAACACATGCAGCTCCTGAGTTTGCATCCCTTGAAAGGTTCTAAAACTGTTTGTGGAGGGTTAAATGTTGGAAGGGCTGATTTATGTCAAATCATAAAGGATGATCCATTGAAGCTGATAAGTTTGGCGTCAAAATTGGAACAGAAGAGAACTGAACTGCAATCTCGCCAGGACTTAAGTATACATATTGAGAAAACAACATTTTTGTTGAGACTGGGGTATGTTGAAAACTCAGAGGAGATGGCAAAAGCACTAAAAAGATTCCGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAGCAGTGTCATTGAAATGATCAAACGAGCTCCAATGATCCTGAACCAGACCAAAGACATAATTGTAAAAAAGCTTGATTGCTTAATAAACAATATAGGTTACCCATTAGAATGTGTGACAGCATTTCCAGCCTACTTATGCTATGATTTGGAGAGAATTAATAAAAGATTTTTAATGTATGCATGGCTGAGGAAAAGAAATGTAGTGAAGCCCAATTTGACATTGAGCACCATCCTTGCATCTTCTGATGAGCGGTTTGTAAAATACTTTGTAGATGTGGATCCTGAAGTAACAAATGCGTTTGATTCTTTAATTTTCCTGAAGTATCAAAGGCATGCTTGGGTGCTGTCCTGTGCACAGGCCTACCCAGCTGCCACCCCTTGGCCTGCCTCAGCTGATGTTTCAGCTGCCTGTGATGAGGGGCAGGGATGGAATCCTGGACACAAACCAGAACCAGCTGAAGCTCCAACTGACCTGAGGCATACCCAAGTGGTTTTATATTTTTCACTCCTCTGTTATCTTCAGCTACCTTTTCATTCCTCCTATATGTTAAAACAGAAAACATACGCGATAATATTCACATCAAACAAAACAATATTACAACTCAATACGGAATATTCTGCTTATTTTATTTTTTCATAA 1881 0.3876 MRSSNFSSRVSRFARTEAQEVLLDYFHSTRGYSFVDAEYMSKNSPHFLQSLVFRFNGHEDVARSLKKFLRYNAINEFEPFFESLGINPSELNLVLPPGMMFLTDDYVMLENFHALCDYGVPRNRMGKMYKVGKEIFGYRSGLLSSKFRAYENLGLSKSTVIKLVSCCPSLLIGDINCEFATVLDWLKRIGFQNDWIGNYVSCTRTYNWKKMLDTIDFLHNVGCSGKQLHNLFKENPALLLEGSGKKVYLLVRLLKLGLKMSVFYSSFIQNPQNLSNKCVKNLLRVVDFLYNIGMESEDIASILSKHMQLLSLHPLKGSKTVCGGLNVGRADLCQIIKDDPLKLISLASKLEQKRTELQSRQDLSIHIEKTTFLLRLGYVENSEEMAKALKRFRGRGDQLQERFDCLVEAGLDYSSVIEMIKRAPMILNQTKDIIVKKLDCLINNIGYPLECVTAFPAYLCYDLERINKRFLMYAWLRKRNVVKPNLTLSTILASSDERFVKYFVDVDPEVTNAFDSLIFLKYQRHAWVLSCAQAYPAATPWPASADVSAACDEGQGWNPGHKPEPAEAPTDLRHTQVVLYFSLLCYLQLPFHSSYMLKQKTYAIIFTSNKTILQLNTEYSAYFIFS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2612 626 FunFam mTERF family protein 54 210 - -
Dere04g2612 626 PANTHER CGI-12 PROTEIN-RELATED 19 505 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 Gene3D Transcription termination factor 3, mitochondrial 43 177 IPR038538 -
Dere04g2612 626 Gene3D Transcription termination factor 3, mitochondrial 244 517 IPR038538 -
Dere04g2612 626 SMART mt_12 449 480 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 SMART mt_12 126 156 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 SMART mt_12 417 448 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 SMART mt_12 265 295 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 SMART mt_12 229 261 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 Pfam mTERF 109 240 IPR003690 GO:0003690|GO:0006355
Dere04g2612 626 Pfam mTERF 273 499 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2612 Dere-ChrDere04 34575519 34578922 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere04g2612 mTERF 5e-19 No_clan