Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2594 ATGAAGCTCGAGAATCGAATGGAAAACGAAGACTCCGATGAACCTGAAAAGAAGAGGCCACATTTGAGTTCAGTGTCCTCCCCTATGGCACGAAATTCAACTAACCCATCAAATAACAAATGTGCTGATGTGGGAGTCTTGCAGTTCCAGAACCAGCAGCTTGTTCAGCAGATAGACCTCCAGAAAAAGGCATTGCATGATCTTGAAGTAAAGGTTGCAAACTTAAAAGACAGGCAATATTCTTATGATGACATGATAATTGCAGTGAACCAACTCTGGAGTCAGTTGGTTGATGATCTAATTCTTCTTGGAATACAAGCGGGAAGAGGCCAAAATGCATTACAAAATTTAAATTACCCTGGTAATCCTCAAGGTTCACTTCCTTCATGTCCTGTGGAGGATGTCTTCCTTTGTAGATTAATACAGAAAGATTCAATTGAAGCCAGCAGTAGCAATGAGATCATTAATTATGTTGAGGAAAAGCTTTCTTTGCGTCACTCATCGACAATGGAGTTGTTGAAACTTCTTGAAGATACCATTCATGCTCAGAGGGAAAGAACATACTGTATTGCCCAGGGTTTGCATGGAAAATTAACTTCCGAAGATGCTGTTATTCAAATGTCCAAGATTGATGATATGATGAAAGAGGAGGCAAACATTTTACGTGAAGTAATTGATGCTCTCCATGTCAAGCATAAAAAGTATACTGTTGGTATTCAAAATTATATTAGCAGCCACTTGCAGGATCAATCTGAGATTAAACGCTTAGCAGGTGAACTTGATGAAAGCATGGCTGAACTTGAAGATAGTAGGAGAAAATTAGTCAATCTGAAAATGCAAAAGGATGCTGCAATAGGGTTGCATTCTCCCAGTTCAGATGCAGTGAATGGAAACTTGTCTCCTGAAAAGCCTGCAGACAAGGCCATGGGTTTGCGTGAATTAAAAGATTCAATTGAGGAAGCAAAGATAGTGGCTGCTGACCGTCTTTCAGAGCTTCAAGAGGCACAGGAAGACAATCTGACCTTGACAAGGCAATTGCAAGATCTTCAGAATGAATTGACTGATGACAAGTATGTACGCTCATCCCGAATCTATTCTTTGGTAAACGATCAACTCCAACATTGGAATACTGAATTGGAGCGATATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGGGTCCATGTCATGAAATGGGAGAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCATATGGTTGACAGTTCTGACCGTAGGACTGAAGAGCTAGAGCTTCAGTTGCAGAAGTGTACTATTGAGAAGAATGATATTGAAATAAAGTTGGAAGAAGCTATACAGGATACTGGGAGAAAAGATATTAAATCTGAGTTTCATGTCATGGCTTCTGCATTATCTAAAGAAATGGGAATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCCTTACGTGAGAAAGCACATTCACTAAGATCTTTGTTGAGCGAGAAGACAAGTGAAATAAAGAGCTTAGCAAACAAATGTGCGGAACAGGTTGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAAGTTGCAGAAGGAAAAAGTGGAATTACAGTACTTTCTGGATTTGCATGGACAGGAGAATTATGATAAAAGAGGTTTAGTTGAAATCAGAGAATCAGAAAGCAAAGCTCTCTCTCAAGCTGAAGTGCTGAAAAATGCTTTAGATGAGCATAGTTTAGAGTTGAGAGTAAAAGCAGCTAACGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAGGATCTAAGGGCCAAGCTGGATGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTTAAAGATGCTGAGTCGGAGGCATATATATCTGAAATTGAGACTATTGGACAAGCATATGAAGATATGCAGACGCAGAACCAACATCTGTTGCAGCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAGAGCGTGAAGACAAAACAGGCACATAGCACTTTACTATCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAATGCTTCAATAGAAACTTTAAAGATGAGGATTACACTCAGTGAAGACCAGATGAAAGCTCTTTTATCAGAAGCCATTAAATCTACTCAAGATGAAAAACACCTTGTAATCACCCTGGAATCTGCAAAGTGGGAGTTGGCTGATGCTGAAAAGGAGTTGAAGTGGCTTAAGTCTGCTGTTGCTTCTTCTGAGAAAGAGTATGATCAAATTCAGAAAGACTTGGAATCTATCCAAATGGAGTTGGATACTGAAAGGAGTTCAAGAGAGAAGCTAGAGGAAGAACTCCAGGAATTAAACAGCAAAATTGCTGAGCTAAGTTCCGAAACTGGAGAGACAGCAATACAAAAACTTCAAGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGCACTGTCTGTTCTGATCGTCCGAAGGAGGTGGTGATTGTAAAGTGCTATCATCTGTTCTGCAATCCATGCATTCAAAGGAACTTAGAACTCCGTCATCGCAAGTGTCCTGCCTGTGGAACTGCGTTTGGTCAGAGCGATGTTCGGTTTGTAATAATATGA 2658 0.4018 MKLENRMENEDSDEPEKKRPHLSSVSSPMARNSTNPSNNKCADVGVLQFQNQQLVQQIDLQKKALHDLEVKVANLKDRQYSYDDMIIAVNQLWSQLVDDLILLGIQAGRGQNALQNLNYPGNPQGSLPSCPVEDVFLCRLIQKDSIEASSSNEIINYVEEKLSLRHSSTMELLKLLEDTIHAQRERTYCIAQGLHGKLTSEDAVIQMSKIDDMMKEEANILREVIDALHVKHKKYTVGIQNYISSHLQDQSEIKRLAGELDESMAELEDSRRKLVNLKMQKDAAIGLHSPSSDAVNGNLSPEKPADKAMGLRELKDSIEEAKIVAADRLSELQEAQEDNLTLTRQLQDLQNELTDDKYVRSSRIYSLVNDQLQHWNTELERYKALTESLQAERVHVMKWEKELNSKLESADTARHMVDSSDRRTEELELQLQKCTIEKNDIEIKLEEAIQDTGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLSEKTSEIKSLANKCAEQVVEIKSLKTLIEKLQKEKVELQYFLDLHGQENYDKRGLVEIRESESKALSQAEVLKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSESVKTKQAHSTLLSEKQALAKQLQQINASIETLKMRITLSEDQMKALLSEAIKSTQDEKHLVITLESAKWELADAEKELKWLKSAVASSEKEYDQIQKDLESIQMELDTERSSREKLEEELQELNSKIAELSSETGETAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVII 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2594 885 Coils Coil 253 280 - -
Dere04g2594 885 Coils Coil 318 352 - -
Dere04g2594 885 Coils Coil 51 78 - -
Dere04g2594 885 Pfam Zinc finger, C3HC4 type (RING finger) 832 874 - -
Dere04g2594 885 CDD RING-HC_Bre1-like 825 881 - -
Dere04g2594 885 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g2594 885 Coils Coil 588 629 - -
Dere04g2594 885 Coils Coil 693 727 - -
Dere04g2594 885 Coils Coil 424 451 - -
Dere04g2594 885 Coils Coil 517 537 - -
Dere04g2594 885 ProSitePatterns Zinc finger RING-type signature. 848 857 IPR017907 -
Dere04g2594 885 MobiDBLite consensus disorder prediction 1 38 - -
Dere04g2594 885 PANTHER RING FINGER PROTEIN-RELATED 12 885 IPR013956 GO:0004842|GO:0010390
Dere04g2594 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 885 IPR013083 -
Dere04g2594 885 SUPERFAMILY RING/U-box 832 876 - -
Dere04g2594 885 Coils Coil 372 392 - -
Dere04g2594 885 ProSiteProfiles Zinc finger RING-type profile. 833 871 IPR001841 -
Dere04g2594 885 Coils Coil 742 811 - -
Dere04g2594 885 SMART ring_2 833 871 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2594 Dere-ChrDere04 34255400 34272334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2594 806 880 RAD5 or RAD16-like Gene Family AT5G05130 27.381 1.04e-07 53.9