LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2593	ATGCGACGATCTAGAGCCGCAGATCCAACGGCAGCCGCAGCAGCAACAACAACCCCCAAATCGATCGGTCAAGAAACCAAGAACTCAGGGAAGGAAATAAGATTCAGAGGCGTCAGAAAGCGTCCATGGGGTCGATTCGCCGCCGAGATCAGAGATCCATGGAAGAAAGCGCGTGTCTGGCTCGGCACCTTCGATTCCGCCGAGGATGCAGCGCGTGCGTACGACGCTGCGGCTCTGTCGTTTCGCGGTCCCAAGGCGAAGACCAACTTTCCTTTGACGAACCCTGAATCGGGCGTGTCTCAGATTCCTTTGTATAATCACCGAGATTTCGAAGATCACCATCACCACCACCACGGTTTCTCGAAGTTCGATCACGCCGTTCAGGTGAATCGGCCCACCACGAGCAGTATGAGCAGCACCGTCGAATCGTTCAGCGGGCCACGAGTGTCCAATCCGGTGCCGTTGATTCCGAGGGTGCAGCGTAGACCCGTGAACCCGGTCCCACCGGATGATTGCCACAGCGATTGCGATTCTTCGTCTTCGGTGATCGACGACGAGGACTGCGTGCTCACCTCTTCGTTCCGGAAAATCCTGCCGTTCGATCTCAACAGCCCGCCGCCCATGGACGACGATGATTTCACCGCTTTGTGTCTCTGA	657	0.5677	MRRSRAADPTAAAAATTTPKSIGQETKNSGKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAALSFRGPKAKTNFPLTNPESGVSQIPLYNHRDFEDHHHHHHGFSKFDHAVQVNRPTTSSMSSTVESFSGPRVSNPVPLIPRVQRRPVNPVPPDDCHSDCDSSSSVIDDEDCVLTSSFRKILPFDLNSPPPMDDDDFTALCL	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2593	218	PRINTS	Ethylene responsive element binding protein signature	57	73	IPR001471	GO:0003700\|GO:0006355
	Dere04g2593	218	PRINTS	Ethylene responsive element binding protein signature	35	46	IPR001471	GO:0003700\|GO:0006355
	Dere04g2593	218	Pfam	AP2 domain	34	83	IPR001471	GO:0003700\|GO:0006355
	Dere04g2593	218	MobiDBLite	consensus disorder prediction	1	36	-	-
	Dere04g2593	218	SUPERFAMILY	DNA-binding domain	35	92	IPR016177	GO:0003677
	Dere04g2593	218	SMART	rav1_2	34	97	IPR001471	GO:0003700\|GO:0006355
	Dere04g2593	218	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	23	188	-	-
	Dere04g2593	218	Gene3D	AP2/ERF domain	33	93	IPR036955	GO:0003700\|GO:0006355
	Dere04g2593	218	FunFam	Ethylene-responsive transcription factor 2	34	92	-	-
	Dere04g2593	218	MobiDBLite	consensus disorder prediction	159	180	-	-
	Dere04g2593	218	CDD	AP2	34	91	IPR001471	GO:0003700\|GO:0006355
	Dere04g2593	218	ProSiteProfiles	AP2/ERF domain profile.	34	91	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2593	Dere-ChrDere04	34246916	34247572	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2593	1	206	AP2-EREBP Transcription Factor Family	AT1G50640	55.157	1.54e-43	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere04g2593		AP2	8.7e-14	CL0081