Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2592 ATGCCAGAAAACCGGCAGGTTCAGAAGAATGCTGCTTTCAATCAATCTGGTGACAACATTGAAGAAGCCATTTTTCGTTTGAAAATCAATGATAATCGGGAGAGAAATGACGTGGCTCAGTCAACCCAATATCCAGATCGACCTGGTGAACCTGACTGCTTGTATTACTTGAGGACTGGGTTGTGTGGTTATGGAAGTAACTGTCGATATAATCACCCTCCTCATATTGCACTTGGTGCACAGTATGCTGAAGAACTACCTGAGAGAATTGGACAGCCTGATTGTGGGTATTTTCTTAAGACAGGGACTTGCAAGTATGGATCAACATGCAAATATCATCATCCAAGGGACAGAAGAGGTGCTGCTCCTGTGTCCTTCAATGTCTTAGGTCTTCCCATGCGTCAGGAAGAGAAATCATGTCCCTATTATATGCGAACTGGATCTTGTAAGTTTGGAGTTGCTTGCAAGTTTCATCATCCGCAGCCTGCTTCCCTTGGAACCTCCCCTGCTGCTGGATCTCCTTCCCCAACAATTATTCCTTCATCCGGTTTACCATATGTTGGTGGGCTTCCTGCATGGTCATTACTGAGAATGTCATATATGTCCGGGCAGGGTCTTCAATCCTATGTGCCTGCTTTTCTGTCTTCTCCACAAGGCGTTATACCTACACCGGGCTGGAACAATTACATGGTTAATTTATCATCAATGAATCCAACTCTCCCAGAGAGGCCTGATCAACCGGAATGTCGATTCTTTATGGACACTGGCACCTGCAAATATGGATCTGATTGCAAGTACCATCACCCCAGAGAAAGAGTTGCCCAATCAATGATAAATCCTCTTGGCCTTCCTGTTAGACCTGGACAAGCCATTTGTTCTTACTACAGAACCTATGGAATATGCAAGTATGGCCCAACTTGCAAATATGATCATCCAGTTTTGGCGTTCCCTCAGAACTATGGCTTGAGCCCATCTTCTTTGTCCCTGCTTGATACATCCTTTGTAAGTAATCCAACTGGCTTGCCAACAATCCGAGCACCGGAGACATCTCCGACAAAATTATCTAGTGACAAGGTTCAGCCCTCTGATACAAAATCTTCTTCAGAAGATTCCCCGAAACAAGCTGATGCGACACAAAATTCCTCGGAGACTTTAAAGGGCTAA 1164 0.4476 MPENRQVQKNAAFNQSGDNIEEAIFRLKINDNRERNDVAQSTQYPDRPGEPDCLYYLRTGLCGYGSNCRYNHPPHIALGAQYAEELPERIGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGAAPVSFNVLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQPASLGTSPAAGSPSPTIIPSSGLPYVGGLPAWSLLRMSYMSGQGLQSYVPAFLSSPQGVIPTPGWNNYMVNLSSMNPTLPERPDQPECRFFMDTGTCKYGSDCKYHHPRERVAQSMINPLGLPVRPGQAICSYYRTYGICKYGPTCKYDHPVLAFPQNYGLSPSSLSLLDTSFVSNPTGLPTIRAPETSPTKLSSDKVQPSDTKSSSEDSPKQADATQNSSETLKG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2592 387 Gene3D - 237 315 - -
Dere04g2592 387 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Dere04g2592 387 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Dere04g2592 387 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Dere04g2592 387 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Dere04g2592 387 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Dere04g2592 387 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Dere04g2592 387 Gene3D - 91 171 - -
Dere04g2592 387 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Dere04g2592 387 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 270 IPR000571 GO:0046872
Dere04g2592 387 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Dere04g2592 387 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 312 IPR000571 GO:0046872
Dere04g2592 387 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Dere04g2592 387 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Dere04g2592 387 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Dere04g2592 387 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
Dere04g2592 387 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Dere04g2592 387 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Dere04g2592 387 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Dere04g2592 387 Gene3D - 7 84 - -
Dere04g2592 387 PANTHER PROTEIN PHOSPHATASE RELATED 22 353 - -
Dere04g2592 387 MobiDBLite consensus disorder prediction 340 387 - -
Dere04g2592 387 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Dere04g2592 387 SUPERFAMILY CCCH zinc finger 284 312 IPR036855 GO:0046872
Dere04g2592 387 SUPERFAMILY CCCH zinc finger 246 272 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2592 Dere-ChrDere04 34228202 34232165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2592 1 386 C3H Transcription Factor Family AT1G04990 49.515 1.82e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere04g2592 zf-CCCH 1.5e-08 CL0537