Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2580 ATGAAAGTAGCGGAGCTCCAAGTTCAACTCCATCATCACCCCCATCACCAGCAGCAGCAGCGGCAGAACAAGCAGAAAGTGACGACCCAGATGTGTAGGAAGATCCAATTAGGTGTCGCCGACCACGTCTCCCCGCCAATCTCCACCGGTCCCGCCGATGGCTGTGATGAGGTCGATGACGGCGAGGATCTCTTCGTCCCGCCTCTCAATTTCGCCATGGTGGATAACGGCATTTTCAGGTCTGGCTTCCCTGAGCCCGCCAATTTCTCCTTTCTGCAAACCCTCGGCCTTCGCTCCATCATATATCTATGTCCTGAGCCGTACCCGGAGGCTAACATGGAGTTCCTGAAGTCAAATGGGATCAAGCTTTATCAATTCGGAATTGAAGGTCATAAGGAGCCTTTTGTAAACATCCCAGAGGACACAATCCGTGAAGCACTGAAAGTTGTTCTTGATGTCAAGAACCACCCAGTTTTAATTCACTGTAAACGAGGAAAGCATCGAACAGGTTGTCTCGTAGGATGCTTAAGAAAGCTGCAAAAATGGTGCTTATCATCAGTGTTTGATGAGTACCAGCGATTTGCAGCTGCCAAGGCAAGAGTTTCAGACCAAAGATTCATCGAGTTGTTCGACATTTCCAGCCTGAAGCATTTGCCCATGTCATTCTCGTGTTCAAAGAGGAATGAGCGTAGATGTGCCTTGATTTTTTCTCCAGCCTCTGAGAAATACAAGACAAGCTTATTCTATCCAGAAAATCTTGGTGGGTAG 768 0.4831 MKVAELQVQLHHHPHHQQQQRQNKQKVTTQMCRKIQLGVADHVSPPISTGPADGCDEVDDGEDLFVPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDVKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISSLKHLPMSFSCSKRNERRCALIFSPASEKYKTSLFYPENLGG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2580 255 PRINTS Plant and fungal dual specificity phosphatase signature 138 152 IPR020428 GO:0016791
Dere04g2580 255 PRINTS Plant and fungal dual specificity phosphatase signature 102 115 IPR020428 GO:0016791
Dere04g2580 255 PRINTS Plant and fungal dual specificity phosphatase signature 65 82 IPR020428 GO:0016791
Dere04g2580 255 PRINTS Plant and fungal dual specificity phosphatase signature 121 135 IPR020428 GO:0016791
Dere04g2580 255 CDD PFA-DSP_Siw14 64 211 - -
Dere04g2580 255 MobiDBLite consensus disorder prediction 7 26 - -
Dere04g2580 255 ProSiteProfiles Dual specificity protein phosphatase domain profile. 70 224 IPR020422 GO:0006470|GO:0008138
Dere04g2580 255 Gene3D Protein tyrosine phosphatase superfamily 64 214 IPR029021 -
Dere04g2580 255 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 65 212 IPR029021 -
Dere04g2580 255 PANTHER TYROSINE-PROTEIN PHOSPHATASE 31 222 - -
Dere04g2580 255 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Dere04g2580 255 FunFam probable tyrosine-protein phosphatase At1g05000 64 214 - -
Dere04g2580 255 Pfam Tyrosine phosphatase family 66 217 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2580 Dere-ChrDere04 33918203 33922478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2580 61 227 Protein tyrosine phosphatase (PTP) family AT4G03960 80.240 2.88e-102 294