Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere04g2529 | ATGAAGAACAATCTGATATCTCTTGCAAGAACTATTGCAACAAAATTCTACTGCCCATCATCTTCTCCATGGCGATTCTATTGTTCGACATCCTCAGGGTCTACTCCTTCCAGCAATAAACTCTTTGTTGGAGGGTTGTCATGGTCAGTGGATGAGAAGTCTCTCAAAGATGCTTTCTCTTCATTTGGTGAAGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGGTTTGGATTTGTCATATTTTCGATCAAAGATAATGCTAAAAGTGCAAAAGATGCAATGGACGGAAAGGCACTGTTAGGAAGACCATTGAGAATAAATTTTGCTCTTGAGAAGGTCCGTGGCGGACCTGTTGTAGTTCCTCGGATTTCAGATTTTGGACATCTAAATAGGCGCAACACTTGA | 423 | 0.4137 | MKNNLISLARTIATKFYCPSSSPWRFYCSTSSGSTPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVIFSIKDNAKSAKDAMDGKALLGRPLRINFALEKVRGGPVVVPRISDFGHLNRRNT | 140 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere04g2529 | 140 | CDD | RRM2_NsCP33_like | 40 | 115 | - | - | |
Dere04g2529 | 140 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 39 | 117 | IPR000504 | GO:0003723 | |
Dere04g2529 | 140 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 41 | 111 | IPR000504 | GO:0003723 | |
Dere04g2529 | 140 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 25 | 118 | - | - | |
Dere04g2529 | 140 | SMART | rrm1_1 | 40 | 113 | IPR000504 | GO:0003723 | |
Dere04g2529 | 140 | SUPERFAMILY | RNA-binding domain, RBD | 31 | 123 | IPR035979 | GO:0003676 | |
Dere04g2529 | 140 | Gene3D | - | 22 | 120 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere04g2529 | Dere-ChrDere04 | 32124102 | 32125952 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere04g2529 | 37 | 118 | C2H2 Transcription Factor Family | AT2G19380 | 37.805 | 3.31e-14 | 66.6 |