Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2529 ATGAAGAACAATCTGATATCTCTTGCAAGAACTATTGCAACAAAATTCTACTGCCCATCATCTTCTCCATGGCGATTCTATTGTTCGACATCCTCAGGGTCTACTCCTTCCAGCAATAAACTCTTTGTTGGAGGGTTGTCATGGTCAGTGGATGAGAAGTCTCTCAAAGATGCTTTCTCTTCATTTGGTGAAGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGGTTTGGATTTGTCATATTTTCGATCAAAGATAATGCTAAAAGTGCAAAAGATGCAATGGACGGAAAGGCACTGTTAGGAAGACCATTGAGAATAAATTTTGCTCTTGAGAAGGTCCGTGGCGGACCTGTTGTAGTTCCTCGGATTTCAGATTTTGGACATCTAAATAGGCGCAACACTTGA 423 0.4137 MKNNLISLARTIATKFYCPSSSPWRFYCSTSSGSTPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVIFSIKDNAKSAKDAMDGKALLGRPLRINFALEKVRGGPVVVPRISDFGHLNRRNT 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2529 140 CDD RRM2_NsCP33_like 40 115 - -
Dere04g2529 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Dere04g2529 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Dere04g2529 140 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 118 - -
Dere04g2529 140 SMART rrm1_1 40 113 IPR000504 GO:0003723
Dere04g2529 140 SUPERFAMILY RNA-binding domain, RBD 31 123 IPR035979 GO:0003676
Dere04g2529 140 Gene3D - 22 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2529 Dere-ChrDere04 32124102 32125952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2529 37 118 C2H2 Transcription Factor Family AT2G19380 37.805 3.31e-14 66.6