LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2521	ATGATTTTCAGTTTTCTGTTCAACTTAATGGAACCCAGATTTGGGTTTCTGGTTTTCTTCTTCGTCTTCTTGGCTTCAGGTTTTCCCAGTGCAGAATCCCAGTGTAGCAAGGGCTGTAATCTAGCTCTAGCCTCCTACTACGTTAGGCCTGGTTCCAACCTTTCTTTAATCACACAACTGACTCAATCCCAGGTTCTTTCAAACGAAGACGGCATCATCAGCTACAACACTGACAGTACAATCAGCAGAGATTATGTCCAATCCACTATAAGAATCAACATCCCATTCCCATGTGATTGCCTTGACGGTGGATTTCTGGGTCACATGTTTCAATACAAGGTTAGCCAGGGTGATACCTACGAGACAGTTGCCGAGACATATTATTCCAATTTAACCACAGTTGAGTGGTTGCAGAAGTTCAATAGCTACAAAATAGGTCAGATTCCTGAAAGTGGAACACTTAATGTGACGATTAACTGTTCTTGTGGTAACGGCGAAGTCTCAAAACTCTATGGATTGTTCATCACATACCCACTTAGGCCTGGAGAGACTTTGCAATCAGTTGCCAATGAAGTGAAACTTGACAATGGTTTGCTGCAGAGGTACAATCCGGGTGTGAATTTCAGCCAAGGGAGTGGTTTGGTTTATATCCCAGGCAAAGATCCAAATGGTAGCTACGTTCCACTGGGTTCTAGTGCAGGAGCAGGAGGTCTGGCAGGCGGGGTTATTGCTGGAATATCTGTTGGAGCAGCAGCTGGGCTTCTGTTGTTGGCAGTTTCTATATATTTTGGATATTTTCGAAAAAAGATATACGGGGTGAAATTACTCTCTAAAGATTCCCAAGAGCCCTCTACCCAAGGAGGGAATGGGTCTGGTGGTTCTACTGGCAACACAGGCATTACAGTGGACAAATCAGTGGAATTCTCATATGAAGAATTAGCCACTGCCACAGATAACTTCAGTATGGCTAATAAAATTGGTCAAGGTGGCTTTGGTGCTGTCTATTATGCAGAGCTGAGAGGAGAGAAAGCCGCAATCAAGAAGATGGATATGCAGGCGAAAAGAGAATTTCTTGCTGAACTGAAAGTCCTAACACATGTTCATCACCTTAACCTGGTGTGCTTAATTGGATATTGTGTTGAGCGCTCTCTTTTCCTTGTTTATGAATACATTGAGAATGGAAACTTAAGTCAACATCTGCGTGGTTCAGGAAGAGATCCATTGCCATGGCCTACCCGTGTACAAATTGCTCTGGATTCAGCCAGAGGTCTTGAATATATTCACGAGCATACAGTTCCCGTCTATGTCCACCGTGACATAAAGTCAGCAAATATATTAATAGATAAAAGCTTCCATGGAAAGGTTGCAGATTTTGGATTAGCTAAACTGACTGAAGTTGGAAGCTCATCTCTTCCCACTGGTCATCTTGTGGGAACATTTGGATATATGCCACCAGAATATGCTCAATATGGTGATGTTTCTCCTAAGATAGATGTCTATGCTTTTGGGGTTGTTTTGTATGAGCTTATTTCTGCCAAGGAAGCTATCATCAAGACGAGTAAATCTGTACCTGACACAAAGGGCCTCGTAACAATGTTTAATGGAGTTCTTAATCAGCCTGATCCGACAGAAGCTCTTCACAAATTGGTTGACCCAAGGCTTGGGGATAACTACCCTATTGGTTCAGTTTACAAAATGGCTCAACTTGCCAAAGCATGCACACATGAAAATCCCCAACTGCGTCCAAGTATGAGATCAATTGTGGTTGTTCTTATGACACTTTTTTCTTCTACTACCGAGGATTGGGATCTTGGCGCCTTGTATGAAACTCCAACTCTCATGTCAGGAAGATAG	1854	0.4283	MIFSFLFNLMEPRFGFLVFFFVFLASGFPSAESQCSKGCNLALASYYVRPGSNLSLITQLTQSQVLSNEDGIISYNTDSTISRDYVQSTIRINIPFPCDCLDGGFLGHMFQYKVSQGDTYETVAETYYSNLTTVEWLQKFNSYKIGQIPESGTLNVTINCSCGNGEVSKLYGLFITYPLRPGETLQSVANEVKLDNGLLQRYNPGVNFSQGSGLVYIPGKDPNGSYVPLGSSAGAGGLAGGVIAGISVGAAAGLLLLAVSIYFGYFRKKIYGVKLLSKDSQEPSTQGGNGSGGSTGNTGITVDKSVEFSYEELATATDNFSMANKIGQGGFGAVYYAELRGEKAAIKKMDMQAKREFLAELKVLTHVHHLNLVCLIGYCVERSLFLVYEYIENGNLSQHLRGSGRDPLPWPTRVQIALDSARGLEYIHEHTVPVYVHRDIKSANILIDKSFHGKVADFGLAKLTEVGSSSLPTGHLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAIIKTSKSVPDTKGLVTMFNGVLNQPDPTEALHKLVDPRLGDNYPIGSVYKMAQLAKACTHENPQLRPSMRSIVVVLMTLFSSTTEDWDLGALYETPTLMSGR	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2521	617	Pfam	Protein tyrosine and serine/threonine kinase	322	589	IPR001245	GO:0004672\|GO:0006468
	Dere04g2521	617	ProSitePatterns	Protein kinases ATP-binding region signature.	326	348	IPR017441	GO:0005524
	Dere04g2521	617	SMART	serkin_6	320	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g2521	617	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	17	605	IPR044812	GO:0019199\|GO:0045087
	Dere04g2521	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	435	447	IPR008271	GO:0004672\|GO:0006468
	Dere04g2521	617	SUPERFAMILY	Protein kinase-like (PK-like)	300	591	IPR011009	-
	Dere04g2521	617	FunFam	PTI1-like tyrosine-protein kinase 3	391	605	-	-
	Dere04g2521	617	FunFam	LysM receptor kinase 2	299	390	-	-
	Dere04g2521	617	ProSiteProfiles	Protein kinase domain profile.	320	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g2521	617	Gene3D	Transferase(Phosphotransferase) domain 1	391	601	-	-
	Dere04g2521	617	Gene3D	Phosphorylase Kinase; domain 1	294	390	-	-
	Dere04g2521	617	MobiDBLite	consensus disorder prediction	279	298	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2521	Dere-ChrDere04	31981808	31989496	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2521	17	617	Receptor kinase-like Gene Family	AT3G21630	58.833	0.0	693

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Dere04g2521		PK_Tyr_Ser-Thr	8.5e-46	CL0016