LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2513	ATGGAACCCAGATTTGGGTTTCTGGTTTTCTTCTTCGTCTTCTTGGCTTCAGGTTTTCCCAGTGCAGAATCCAAGTGTAGCAAGGGCTGTAATCTAGCTCTAGCTTCCTACTACGTTTGGCCTGGTTCCAACCTTTCCTTAATCACACAACTGATGCAATCCCAGGTTCTTTCAAACGAAGACGGCATCATCAGCTACAACACTGACAGTACAATCAGCAGAGGTTACGTCCAATCCACTACAAGAATCAACATCCCATTCCCATGTGATTGCCTTGACGGTGAATTTCTGGGTCACATGTTTCAGTACAACGTTAGCCAGGGTGATACCTACGAGACAGTTGCCGAGACATATTACTCCAATTTAACCACAGTTGAGTGGTTGCAGAAGTTCAATAGCTACAAAATAGGTCAGATTCCTGAAAGTGGAACACTTAATGTGACGATTAACTGTTCTTGTGGTAACAGCGAAGTCTCAAAACTCTATGGATTGTTCATCACATACCCGCTTAGGCCTGGAGAGACTTTGCAATCAGTTGCCAATGAAGTGAAACTTGACAATGGTTTGCTGCAGAGGTACAATCCGGGTGTGAATTTCAGCCGAGGGAGTGGTTTGGTTTATATCCCAGGCAAAGATCCAAATGGTAGCTACGTTCCACTGGGTTCTAGTGCAGGAGCAGGAGGTCTGGCAGGCGGGGTTATTGCTGGAATATCTGTTGGAGCAGCAGCTGGGCTTCTGTTGTTGGCAGTTTCTATATATTTTGGATATTTTCGAAAAAAGATATACGGGGTGAAATTACTCTCTAAAGATTCCCAAGAGCCCTCTACTCAAGGAGGGAATGGGTCTGGTGGTTCTACTGGCAACACAGGCATTACAGTGGACAAATCAGTGGAATTCTCCTATGAAGAATTAGCCACTGCCACAAATAACTTCAGTATGGCTAATAAAATTGGTCAAGGTGGCTTTGGTGCTGTCTATTATGCAGAGCTGAGAGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAGGCGACAAGAGAATTTCTTGCTGAACTGAAAGTCCTAACACATGTTCATCACCTTAACCTGGTGCGCTTAATTGGATATTGTGTTGAGCGCTCTCTTTTCCTTGTTTATGAATACATTGAGAATGGAAACTTAAGTCAACATCTGCGTGGTTCAGGAAGAGATCCATTGCCATGGCCTACCCGTGTACAAATTGCTCTGGATTCAGCCAGAGGTCTTGAATATATTCACGAGCATACAGTTCCCGTCTATGTCCACCGTGACATAAAGTCAGCAAATATATTAATAGATAAAAGCTTCCATGGAAAGGTTGCAGATTTTGGATTAGCTAAACTGACTGAAGTTGGAAGCTCATCTCTTCCCACTGGTCATCTTGTGGGAACATTTGGATATATGCCACCAGAATATGCTCAATATGGTGATGTTTCTCCTAAGATAGATGTCTATGCTTTTGGGGTTGTTTTGTATGAGCTTATTTCTGCCAAGGAAGCTATCATCAAGACGAGTAAATCTGTACCTGACACAAAGGGCCTCGTAACAATGTTTAATGGAGTTCTTAATCAGCCTGATCCGACAGAAGCTCTTCACAAATTGGTTGACCCAAGGCTTGGGGATAACTACCCTATTGGTTCAGTTTACAAAATGGCTCAACTTGCCAAAGCATGCACACATGAAAATCCCCAACTGCGTCCAAGTATGAGATCAATTGTGGTTGTTCTTATGACACTTTTTTCTTCTACTACCGAGGATTGGGATCTTGGCGCCTTGTATGAGACTCCAACTCTCATGTCAGGAAGATAG	1827	0.4335	MEPRFGFLVFFFVFLASGFPSAESKCSKGCNLALASYYVWPGSNLSLITQLMQSQVLSNEDGIISYNTDSTISRGYVQSTTRINIPFPCDCLDGEFLGHMFQYNVSQGDTYETVAETYYSNLTTVEWLQKFNSYKIGQIPESGTLNVTINCSCGNSEVSKLYGLFITYPLRPGETLQSVANEVKLDNGLLQRYNPGVNFSRGSGLVYIPGKDPNGSYVPLGSSAGAGGLAGGVIAGISVGAAAGLLLLAVSIYFGYFRKKIYGVKLLSKDSQEPSTQGGNGSGGSTGNTGITVDKSVEFSYEELATATNNFSMANKIGQGGFGAVYYAELRGEKAAIKKMDMQATREFLAELKVLTHVHHLNLVRLIGYCVERSLFLVYEYIENGNLSQHLRGSGRDPLPWPTRVQIALDSARGLEYIHEHTVPVYVHRDIKSANILIDKSFHGKVADFGLAKLTEVGSSSLPTGHLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAIIKTSKSVPDTKGLVTMFNGVLNQPDPTEALHKLVDPRLGDNYPIGSVYKMAQLAKACTHENPQLRPSMRSIVVVLMTLFSSTTEDWDLGALYETPTLMSGR	608

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2513	608	MobiDBLite	consensus disorder prediction	270	289	-	-
	Dere04g2513	608	ProSiteProfiles	Protein kinase domain profile.	311	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g2513	608	FunFam	LysM receptor kinase 2	290	381	-	-
	Dere04g2513	608	SUPERFAMILY	Protein kinase-like (PK-like)	291	582	IPR011009	-
	Dere04g2513	608	Pfam	Protein tyrosine and serine/threonine kinase	313	580	IPR001245	GO:0004672\|GO:0006468
	Dere04g2513	608	ProSitePatterns	Protein kinases ATP-binding region signature.	317	339	IPR017441	GO:0005524
	Dere04g2513	608	Gene3D	Phosphorylase Kinase; domain 1	285	381	-	-
	Dere04g2513	608	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	8	596	IPR044812	GO:0019199\|GO:0045087
	Dere04g2513	608	FunFam	PTI1-like tyrosine-protein kinase 3	382	596	-	-
	Dere04g2513	608	SMART	serkin_6	311	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g2513	608	Gene3D	Transferase(Phosphotransferase) domain 1	382	592	-	-
	Dere04g2513	608	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	426	438	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2513	Dere-ChrDere04	31852094	31859772	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2513	8	608	Receptor kinase-like Gene Family	AT3G21630	58.833	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Dere04g2513		PK_Tyr_Ser-Thr	4.1e-46	CL0016