Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2505 ATGGATGAAATTGGGCAAAAAGCCACTGAGCTGTTTGAAGGCCAAGCCCTGTTGTATCAACAAATATGTCTTTGCGTGTCTCCTATGTGTCTCAAGTGTGCCATTGAACTTGGAATACCAGACGTAATCTACAAGCATGGCCAACCCATTACGCTTTCCCAGTTGGTGTTAGCTCTCAAAGTTCCACCAGCTAAAGCCACTTTTGTGCAGGGGCTCATGAGCTTGCTGGCTCACAATGGCATATTTGCTATCATAAAAAGCAACAATGAAGAAAGTGAAGTAGCTTATGATCTCACTCCTGCATCACGCCTCCTTGTCAATGGCACCAACCGTTGTTTAACTTCAATGGTTCAGTGGGCTCTAAACCCAGTATGGATTGACAAGTTGCATTACTTGGGGAAATGGGTTCGTGGGAAGGGTCTCACACTACCGGAGACCACATCTGGGGTAGGCTTCTGGGACGTCCTTAATCAAAACCCTGCAGATAAGGCAACCTTCCATGAAGCAATGGCAAGTGATTCTGTATTGGTAAACATGGCACTAAGAGACTTAGACTCAGTTTTCGAGGGCATGAGTTCCATCGTTGATGTTGGTGGTGGAACTGGGACGACTGGTAAGATTATCTGTGAAGCATTTCCCAGGTTGAAATGCACAGTGCTTGACCTTCCTGAGGTCGTAGAAAACTTGTCAGGAAACATCAATTTGAGTTATGTTAGTGGGGACATGTTCAAATCCATCCCTCATGCTGATGCAGTTCTGTTTAAGTGGGTTTTACACAACTGGAGTGATGATGATTGCGTCAAGATACTTAAAAATGCCAAAGAAGCTATATCAGGCAAGCCCAACGGAGGAAAAGTGATCATCATAGATATAGTGATGAATGAAAAGCAAGACGAACATCAACTGATGGAAACAAAGCTCCTCTTCCACACTTTTATGATGGCTGTATTTAATGCAAAAGAGAGAACTGAGGAAGAATGGAAGCAACTCTTCCTGAAAGCAGGCTTCACAGATTACCAGATATTCCCCATCTTTGGCTTTAGGTCTCTTATTGTGCTTCATCCTTAG 1068 0.4382 MDEIGQKATELFEGQALLYQQICLCVSPMCLKCAIELGIPDVIYKHGQPITLSQLVLALKVPPAKATFVQGLMSLLAHNGIFAIIKSNNEESEVAYDLTPASRLLVNGTNRCLTSMVQWALNPVWIDKLHYLGKWVRGKGLTLPETTSGVGFWDVLNQNPADKATFHEAMASDSVLVNMALRDLDSVFEGMSSIVDVGGGTGTTGKIICEAFPRLKCTVLDLPEVVENLSGNINLSYVSGDMFKSIPHADAVLFKWVLHNWSDDDCVKILKNAKEAISGKPNGGKVIIIDIVMNEKQDEHQLMETKLLFHTFMMAVFNAKERTEEEWKQLFLKAGFTDYQIFPIFGFRSLIVLHP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2505 355 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Dere04g2505 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 355 IPR016461 GO:0008168
Dere04g2505 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 352 IPR029063 -
Dere04g2505 355 SUPERFAMILY "Winged helix" DNA-binding domain 9 108 IPR036390 -
Dere04g2505 355 PANTHER O-METHYLTRANSFERASE 18 339 IPR016461 GO:0008168
Dere04g2505 355 FunFam Coniferyl alcohol 9-O-methyltransferase 2 105 - -
Dere04g2505 355 Gene3D - 2 105 IPR036388 -
Dere04g2505 355 Pfam O-methyltransferase domain 130 336 IPR001077 GO:0008171
Dere04g2505 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Dere04g2505 355 Pfam Dimerisation domain 29 77 IPR012967 GO:0046983
Dere04g2505 355 FunFam O-methyltransferase ZRP4 107 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2505 Dere-ChrDere04 31679724 31681261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2505 13 341 Monolignol Biosynthesis Gene Families AT5G54160 29.290 3.26e-42 149