Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2504 ATGGACGGAATTGGGCAAAAAGCCACTGAGCTGTTTCAGGGCCAAGCCCTGTTGTACCAACAAATGTGTCTTTGTGTGTCTCCTATGTGTCTCAAGTGTGCCATTGAACTTGGAATACCAGACGTAATCCACAAGCATGGCCAACCCATTACTCTTTCCCAGCTGGTGTTAGCTCTCAAAGTTGCACCAGCTAAAGCCACTTTTGTGCAGGGGCTCATGAGCTTGCTGGCTCACAATGGCATCTTTGCTATCATAAAAAACAACAATGAAGAAAGTGAAGTGGCTTATGATCTCACTCCTGCATCACGCCTCCTTGTCAATGGCACCAATCCATGTTTATCTTCAATGCTTCAGTGGGGTCTAGACGCAGGATGGGTGGATATGTTGCAACACGTGGCGAAATGGGTTCGTAGCGAGGATCTCACACTACCGCAGACCACACTTGGAGTAGGCTATTGGGACTTCCTTAGTCAAAACCCTGCATTTATGACAGCATTCAATGAAGCAATGGCAAGTGATTCTCAAATCCTAAACTACGCACTGAGAGACTTTGATTTTGTTTTTGAGGGCTTGATGTTGGACCTTCCTAAAGTTATAGCAAACTTATCATCAGGAAACTCCAATCTGAGTTTTGTTGGTGGGAACATGCTCAAATCCATCCCCCTTGCTGATGCAGTTTTGCTAAAGTGGGTTTTACACAACTGGAGTGATGATGATTGCATAAAAATACTTAAAAATGCCAAAGAAGCTATATCAGACAAGGTTAATGGAGGAAAAGTGATCACCATAGATATAGTGATAAATGAAAAGCAAGACGAGCATCAACTGCTAGAAACAAAGTTTCTCTTCCACACACATATGATGGCTATACATAATGCAAAAGAGAGAACTGAGGAAGAATGGAAGCAACTCTTCCTGAAAGCAGGCTTCACAAATTATCAGATATTCCCCATCTTTGGCTTTAGGTCTCTTATTGTGCTTCATCCTTAA 990 0.4273 MDGIGQKATELFQGQALLYQQMCLCVSPMCLKCAIELGIPDVIHKHGQPITLSQLVLALKVAPAKATFVQGLMSLLAHNGIFAIIKNNNEESEVAYDLTPASRLLVNGTNPCLSSMLQWGLDAGWVDMLQHVAKWVRSEDLTLPQTTLGVGYWDFLSQNPAFMTAFNEAMASDSQILNYALRDFDFVFEGLMLDLPKVIANLSSGNSNLSFVGGNMLKSIPLADAVLLKWVLHNWSDDDCIKILKNAKEAISDKVNGGKVITIDIVINEKQDEHQLLETKFLFHTHMMAIHNAKERTEEEWKQLFLKAGFTNYQIFPIFGFRSLIVLHP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2504 329 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 326 IPR029063 -
Dere04g2504 329 Gene3D - 4 105 IPR036388 -
Dere04g2504 329 Gene3D Vaccinia Virus protein VP39 191 329 IPR029063 -
Dere04g2504 329 PIRSF O-mtase 1 192 IPR016461 GO:0008168
Dere04g2504 329 PIRSF O-mtase 189 329 IPR016461 GO:0008168
Dere04g2504 329 FunFam Coniferyl alcohol 9-O-methyltransferase 3 105 - -
Dere04g2504 329 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 329 IPR016461 GO:0008168
Dere04g2504 329 PANTHER O-METHYLTRANSFERASE 15 312 IPR016461 GO:0008168
Dere04g2504 329 Pfam Dimerisation domain 29 77 IPR012967 GO:0046983
Dere04g2504 329 Gene3D Vaccinia Virus protein VP39 107 190 IPR029063 -
Dere04g2504 329 SUPERFAMILY "Winged helix" DNA-binding domain 9 108 IPR036390 -
Dere04g2504 329 Pfam O-methyltransferase domain 189 310 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2504 Dere-ChrDere04 31657607 31659175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2504 26 315 Monolignol Biosynthesis Gene Families AT5G54160 26.462 1.62e-26 105