Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2494 ATGGCGAAAGAACAACGGACTCTTCTCGTGAGTTCAAAAGCGGAGTTGAAACGGAAGGAGAAGCAGAGGAAGAAGGCCAAGTCTGGCGGCTTTGAGTCCTTGGCTCTCAGCCCCAATGTGTACGGAGGAATCAAGCGCAAAGGGTATAAGGTGCCCACTCCAATTCAGAGGAAAACAATGCCAATCATTCTTTCTGGTGCTGATGTTGTTGCCATGGCTCGTACTGGGTCTGGTAAAACCGCTGCGTTTCTCATCCCAATGCTTCAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCCACAAGAGACTTGGCGCTTCAGACTTTGAAGTTCACTAAAGAGCTTGGCCACTTCACAGATCTTCGTGTTAGTTTATTAGTTGGTGGTGATAGTATGGAAAGTCAGTTTGAGGAATTAGCTCAAAGCCCTGACATTATAATTGCAACACCTGGTAGGCTTATGCACCATCTGTCTGAAGTTGATGACATGTCGCTGCGTACTGTGGAATATGTTGTTTTCGACGAGGCAGATTGTTTATTTGGCATGGGTTTTGCTGAGCAGTTGCATCAAATTCTTACACAGCTGGGCGAGAACCGTCAGACCTTGCTTTTCAGTGCAACATTACCTAGTGCCCTTGCTGAATTTGCGAAGGCTGGCTTGCGTGACCCTCATCTTGTACGTCTAGATTTGGAAACTAAAATCAGCCCTGACCTGAAGCTTGCCTTTTTCACCATGAGGCAGGAAGAGAAATATGCGGCATTGCTGTATTTGATTAGGGAGCAAATTAGTACTGATCAGCAGACACTAATATTTGTATCCACAAAACATCATGTGGAGTTTCTAAACACATTGTTTAGGGAAGAGGGTATTGAGCCCTCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATATATCAAAGTTCAGGGCGAGGAAGACAATGTTGTTGATTGTGACAGATGTTGCTGCTCGGGGTCTAGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCAAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGAGCAGGTCGCACTGGTACTGCCTATTCTTTTGTGACTTCAGAGGATATGCCGTACCTTTTGGATCTTCATTTGTTTCTCTCAAAACCAATCAAAGCTGCTCCTACTGAAGAAGAAGTCTTGCAGGATATGGATGGAGTATTTTCCAAAATTGACCAGGCATTTGCAAAAGGAGAAACTGTTTATGGTCGTTTCCCCCAAAAACTCATTGACCTTGTTTCAGACAGAGTTCGGGAAACCATTGATACTTCTGCAGAACTAACGGCATTGCAGAAAACCTGTCAAAATGCGTTTCGTCTGTATTCAAAGACAAAACCCTTACCTTCAAAGGAGTCTATTAAAAGAGTAAAGGATTTACCACGTGAGGGTTTGCATCCAATTTTCAAGAATGTATTGCAAATGGGGGAATTGATGGCACTTGCTTTTTCAGAGCACTTAAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTGCAGGGACCTTCTCGTCAATGGGTTGATGTGATGAAGAGAAAAAGAGCCATTCATGAGAATGTTATTAATTTGGTTCATGAGCAGCGCACTAAGTGTAATGTGGAAAAGGTGGAACTTCAATCAGATATCACTCCTTCAATGGGGAAAGGGAAAAAGGCCTCTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGAATTACTACATAAGTTCTATACCACAAAATCATCACATGGAAGCAGGTCTTTCAGTAAGGGCGAAGGAAGACTTCTCTTCAAATAGATTGGAATCAGCTGTCTTAGATCTAGTTGCAGATGACAGTACTGGCATTCAGAAACAAAAATCTGTATATCATTGGGATAAGAGAAGTAAAAAGTACATCAAGTTAAACAATGGGGATCGGGTTGCCGCAAATGGAAAGATAAAGACAGAGGGTGGTGCAAAAGTGAAGGCCATCAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATAGTAAGATAGCTTTTAAAGGGACAAATAACGAAGATGATTCTCACGGATCTACAAGTTTGGCAGGGTATTCCCGAGGCGGTCCAAGAAAATTTAAAGGCAGCAAGAAGCAGCATGCAGTGTCTAATGGTCAAGTGCGTTCAGAAATCAAAGATCTGGAGCAAATTCGAAAGGAGAGGCAGATAAAAGCCAATAGACTTTCATATATGAAAAGCAAGTCATCAAAGAAGGGTAAACAATATGGTAGAAATGGGAGAAAAGGAAAGGGTGGTGGACATGGAAAAAAAGGAAAGGCAAAGTAA 2394 0.4244 MAKEQRTLLVSSKAELKRKEKQRKKAKSGGFESLALSPNVYGGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLIPMLQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDLETKISPDLKLAFFTMRQEEKYAALLYLIREQISTDQQTLIFVSTKHHVEFLNTLFREEGIEPSVCYGDMDQDARKIHISKFRARKTMLLIVTDVAARGLDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMPYLLDLHLFLSKPIKAAPTEEEVLQDMDGVFSKIDQAFAKGETVYGRFPQKLIDLVSDRVRETIDTSAELTALQKTCQNAFRLYSKTKPLPSKESIKRVKDLPREGLHPIFKNVLQMGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHLQGPSRQWVDVMKRKRAIHENVINLVHEQRTKCNVEKVELQSDITPSMGKGKKASGSKRKPQSFKDENYYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSTGIQKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTEGGAKVKAIKTGIYKKWKERSHSKIAFKGTNNEDDSHGSTSLAGYSRGGPRKFKGSKKQHAVSNGQVRSEIKDLEQIRKERQIKANRLSYMKSKSSKKGKQYGRNGRKGKGGGHGKKGKAK 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2494 797 Pfam DEAD/DEAH box helicase 53 220 IPR011545 GO:0003676|GO:0005524
Dere04g2494 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 385 IPR027417 -
Dere04g2494 797 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 12 699 - -
Dere04g2494 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 233 IPR014001 -
Dere04g2494 797 MobiDBLite consensus disorder prediction 767 797 - -
Dere04g2494 797 MobiDBLite consensus disorder prediction 1 29 - -
Dere04g2494 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 257 406 IPR001650 -
Dere04g2494 797 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 29 57 IPR014014 GO:0003724
Dere04g2494 797 CDD DEADc_DDX54 29 234 IPR033517 -
Dere04g2494 797 Pfam DBP10CT (NUC160) domain 634 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Dere04g2494 797 SMART ultradead3 48 248 IPR014001 -
Dere04g2494 797 CDD SF2_C_DEAD 255 376 - -
Dere04g2494 797 Gene3D - 248 479 IPR027417 -
Dere04g2494 797 MobiDBLite consensus disorder prediction 747 763 - -
Dere04g2494 797 Gene3D - 2 236 IPR027417 -
Dere04g2494 797 MobiDBLite consensus disorder prediction 701 797 - -
Dere04g2494 797 Pfam Helicase conserved C-terminal domain 257 367 IPR001650 -
Dere04g2494 797 Coils Coil 2 22 - -
Dere04g2494 797 SMART DBP10CT_2 634 696 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Dere04g2494 797 SMART helicmild6 286 367 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2494 Dere-ChrDere04 31447280 31453620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2494 31 400 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 6.19e-59 204