Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2468 ATGGCCGGGACGGTGACGCCGGAGAAGAGCCCCCTAGTATCGCCGACGAGTTCGAGGTCGGTAACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATTCAAGGGTATTCGTTGGCGAAGGGGATGGGAGTCGGGAAGTACATTGCGAGCGATTTGTTTGCGGTCGGAGGGCATCACTGGGCAATTTACTTCTACCCCGACGGCAAAAATCCGGAAGACAATTCCGCCTACGTTTCGGTTTTCATCGCTTTGGCTAGCGATGCCACAGATGTTAGGGCACTGTTTGAGCTCACGCTTCTGGATCAGAGTGGACAAGAAAAGCACAAGGTGCACAGCCATTTTGATCGGTCGCTTGAGAGCGGTCCATATACACTCAAGTATAAGGGTAGCATGTGGGGATACAAGCGGTTTTTTAGACGTTCTTTGCTTGAAAGCTCTGATTACCTTAAGGTTGATTGCCTGAAATTCAACTGTACTGTTGGGGTTGTGGTTTCAGCCGTTGATTGTCCTCAACTTTACTCAGTTAAGGTTCCGGAATCTGACATTGGTGCACACTTTGGCATGCTATTAGATAGTATGGAAGGATCAGATGTTACATTTAATGTGGATGGGGAAAAGTTTGCCGCTCATAAGTTGGTATTGGCTGCTAGATCCCCGAAATTTCGGGCCAAATTATTTGATGGATTAGATGAGGATAAACAGGAGATTATTGTAACAGATTTAGAGCCTAAGGTTTTTAAGGCGATGCTGCACTTTATCTACAGGGATGCCCTTAAAGATGAGGTGGACATGATTCCATCAACCTCATCTTGTGAATTCCCAGTGTCTGAGACATTGTCAGCGAAGTTGTTAGCTGCAGCTGACAAGTATGGCTTGGAGAGGCTTAAACTGATGTGTGAGTCTCGTATCAGCAGAGACATCTGTGTAAATACTGTAGCTGACATATTGACCTGGGCTGATCATTGCCATGCAGCAGAGTTAAAAGCTGTTTGCTTAAAATTTGCCACACAGAATCTGGCAGCTATCATGAGATCGGATGGATTTCAGCGTATGAAAGAAAAATGCCCATGGCTACAGTCAGAGATGCTGAAGACAATTGCCGGCTGCGAGAGTGATTGCTGCAGCAATGGGGGGAAATCTCCGAGTGTGTGGGCCCAACTTTCAGATGGTGGTGATTCAAATGGTGGTCTTGCTGAAAAACGGGGGGATATGAAAGAAAATGGTGGAGAGGGAAGATCCTCTTCTGATCAACTTTGCCATGTTCTGATGGAAAGTTCTGTTAAAAAAGCTGTTACAGTAGTACATGTTGTGCAGGCTTTTTATGGTGTATTTTTTGGTGGAGCGAAGTAG 1350 0.463 MAGTVTPEKSPLVSPTSSRSVTETVNGSHKFVIQGYSLAKGMGVGKYIASDLFAVGGHHWAIYFYPDGKNPEDNSAYVSVFIALASDATDVRALFELTLLDQSGQEKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFFRRSLLESSDYLKVDCLKFNCTVGVVVSAVDCPQLYSVKVPESDIGAHFGMLLDSMEGSDVTFNVDGEKFAAHKLVLAARSPKFRAKLFDGLDEDKQEIIVTDLEPKVFKAMLHFIYRDALKDEVDMIPSTSSCEFPVSETLSAKLLAAADKYGLERLKLMCESRISRDICVNTVADILTWADHCHAAELKAVCLKFATQNLAAIMRSDGFQRMKEKCPWLQSEMLKTIAGCESDCCSNGGKSPSVWAQLSDGGDSNGGLAEKRGDMKENGGEGRSSSDQLCHVLMESSVKKAVTVVHVVQAFYGVFFGGAK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2468 449 MobiDBLite consensus disorder prediction 390 413 - -
Dere04g2468 449 CDD BTB_POZ_BPM_plant 182 304 - -
Dere04g2468 449 SUPERFAMILY POZ domain 173 304 IPR011333 -
Dere04g2468 449 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
Dere04g2468 449 SMART math_3 31 143 IPR002083 GO:0005515
Dere04g2468 449 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Dere04g2468 449 MobiDBLite consensus disorder prediction 396 410 - -
Dere04g2468 449 ProSiteProfiles BTB domain profile. 196 262 IPR000210 GO:0005515
Dere04g2468 449 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g2468 449 CDD MATH 27 160 IPR002083 GO:0005515
Dere04g2468 449 FunFam BTB-POZ and math domain 1 172 301 - -
Dere04g2468 449 SUPERFAMILY TRAF domain-like 23 167 - -
Dere04g2468 449 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 363 IPR045005 GO:0016567
Dere04g2468 449 Pfam BTB/POZ domain 189 304 IPR000210 GO:0005515
Dere04g2468 449 Gene3D Potassium Channel Kv1.1; Chain A 172 301 IPR011333 -
Dere04g2468 449 SMART BTB_4 196 307 IPR000210 GO:0005515
Dere04g2468 449 Gene3D - 306 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2468 Dere-ChrDere04 30989880 30994281 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere04g2468 BTB 1.9e-22 CL0033