Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2445 ATGGCTCATAGGTTGCTTAGGGACCATGAGGCAGACGGTTGGGAACGCTCTGACTTTCCCATCATCTGCGAATCGTGCCTCGGTGACAACCCGTATGTTCGTATGACGAGAGCAGAGTATGATAAGGAGTGCAAGATATGTACACGCCCATTTACTGTTTTTAGATGGAGGCCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAACGTTTGTCAAGTTTGCCTTTTGGATCTTGAATACGGACTACCAGTTCAAGTCCGGGACACTGCTCTCAGCATCAGTTCCCATGATGCCATCCCAAAGAGTGATGTTAACCGGGAGTATTTTGCTGAAGAGCATGATCGTAAGGCTCGAGCTGGCTTAGATTATGAATCTTCATATGGGAAAGTGCGGCCAAATGATACTATTTTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAATCGGGCACATATTTGCAGTTTCTATATAAGGGGTGAGTGTACTAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCTGTAACTGGGGAGTTGTCACAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCACTGAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGCCTCCTGAGGATGAAAGCATTAAAACTCTCTATGTTGGTGGGCTTGATGCTAGGGTCAGTGAGCAGGATCTGCGTGATCACTTTTATGCCCATGGTGAAATAGAATCCATTAAGATGGTGCTTCAACGGGCATGTGCTTTTGTAACCTACACAACCAGAGAAGGTGCTGAAAAAGCAGCGGAAGAACTCTCCAACAAACTGGTTATCAAGGGCCTAAGGCTGAAGCTGATGTGGGGTAGACCTCAGACATCGAAACCTGACTCCGAAAGTTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCTGTTATATCACAGCAGCAGAGCCAGGATCAAACCCAAGGAGTCCATTACTACAACATTCCACCTCCTCAGCAAGACAGAAGTTACTATCCATCAATGGATCCTCAAAGAATGGGCGCTGTTGTTCCTTCCCAAGATGGTGGTCCTTCTGGTGGGGCAACCGGGTCAGGAGAGAATAACAAACCAAATTCGGAGAAGCAGCAAATGCAGCATTATGCCCATCCAATGATGCCTCCACCACCTGGGCAATATCATCATCAGTATTATCCCCCTCCCCACTACGGTTATATGCCACCTGTGCCGCCTTATCAACAGTACCCACCACCATACAGTGCAGGGATGGCCCCACCTCAGCCACCGGCGGCAAATCAACCTTATCAGCATTCTATGCAGCCAGGATCATCTGGTCACTCTGGGTCTGCCCCAACAGGGTCTGGTCCGGCTGGAGCTGCACCTGCAGAATCTGGAACATCAACCTCGGGCTCACAGCAGCAGTGA 1482 0.4811 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDESIKTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPDSESSDQARQQASVAHSGLLPRAVISQQQSQDQTQGVHYYNIPPPQQDRSYYPSMDPQRMGAVVPSQDGGPSGGATGSGENNKPNSEKQQMQHYAHPMMPPPPGQYHHQYYPPPHYGYMPPVPPYQQYPPPYSAGMAPPQPPAANQPYQHSMQPGSSGHSGSAPTGSGPAGAAPAESGTSTSGSQQQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2445 493 MobiDBLite consensus disorder prediction 299 414 - -
Dere04g2445 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Dere04g2445 493 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Dere04g2445 493 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 389 IPR039171 GO:0003723
Dere04g2445 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Dere04g2445 493 SMART rrm1_1 229 297 IPR000504 GO:0003723
Dere04g2445 493 MobiDBLite consensus disorder prediction 328 359 - -
Dere04g2445 493 Gene3D - 149 210 - -
Dere04g2445 493 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Dere04g2445 493 MobiDBLite consensus disorder prediction 452 470 - -
Dere04g2445 493 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Dere04g2445 493 MobiDBLite consensus disorder prediction 377 398 - -
Dere04g2445 493 MobiDBLite consensus disorder prediction 436 451 - -
Dere04g2445 493 MobiDBLite consensus disorder prediction 303 320 - -
Dere04g2445 493 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Dere04g2445 493 CDD RRM_RBM22 227 300 - -
Dere04g2445 493 MobiDBLite consensus disorder prediction 436 493 - -
Dere04g2445 493 Gene3D - 212 311 IPR012677 -
Dere04g2445 493 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Dere04g2445 493 Pfam Torus domain 143 194 IPR032297 -
Dere04g2445 493 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2445 Dere-ChrDere04 30606996 30611828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2445 218 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 4.36e-06 47.4