Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2422 ATGACGGTTTTGTTCTGTTGTTTTTCCTCCCATCCATTTTGTCTGGATATGGATTCATCTGAGCCAGATGGAAATGGGAACGAGGACAGTTTGCTACCACCACCTCCGCCTCCTGAAGTCCCGCCAAATGTTCTTCCAGTTAAAGCAGAAGATATGCTCCCCCCTGAACCGGTTAAGAAAAAGACTTCCCGGGTTCCAATAGCCAGACGTGGTCTGGGATCCAAAGGAAGTAAACTGACACTTCTCACTAATCACTTCAAAGTTAATGTTACTAACAATGACGGCCATTTCTTCCATTACAGTGTAGCTATTTTTTATGAAGATGGGCGCCCTGTAGAAGTTAAGGGTGTAGGAAGAAAAGTGATTGACAGGGTGCAGGAGACTTATGATTCTGAGTTAGCTGGAAAGGAATTTGCCTATGATGGGGAGAAGAGTTTGTTTACTGTTGGACCTCTTCCTCGAAACAAGCTTGAGTTTACAATTGTTCTAGAGGATGTCACATCAAACAGAAATAATGGAAACTGCAGCCCTGATGGTCATGGGAGTCCAAATGAGAGTGACAGGAAGAGGATGCGGAGACCATATCGTGCCAAAACATTTAAGGTGGAGATTAGCTTCGCTGCAAAAATTCCGATGCAGGCCATTGCCAATGCACTACGTGGGCAAGAGTCTGAGAATTTCCAAGAAGCCATTAGGGTGCTTGATATTATATTAAGGCAACATGCTGCTAAGAAAGGCTGCCTACTTGTCCGCCAATCGTTCTTCCACAATGATCCAATGAATTTTGCTGATGTGGGAGGTGGGGTTCTTGGTTGCAGAGGATTCCATTCAAGTTTTAGGACTACACAGAGTGGCTTGTCACTCAACATAGATGTGTCAACTACAATGATTATTCGACCTGGGCCTGTGGTGGACTTCTTAATTGCCAACCAGAATGTGAGAGATCCTTATTCCCTTGACTGGGCCAAGGCTAAACGGACTCTGAAGAATTTGAGGATTACAACAAGCCCATCCAATCAGGAATACAAGATATCTGGGCTAAGTGAACTTCCATGCCGGCAGCAGACGTTTACTCTGAAGAACAAGGGTGGTGATGATGGCTCGGAGGAAGTAACTGTTTATGATTATTTTGTAAATTATCGGAAGATAGATCTCCGATACTCTGCTGATCTGCCATGCATTAATGTTGGAAAGCCAAAACGTCCTACTTATTTCCCCATCGAGCTTTGCTCTTTGGTATCCCTGCAACGGTACACAAAAGCACTGACTACTCTTCAAAGGGCTTCACTTGTGGAGAAGTCCAGGCAGAAGCCACAAGAGAGAATGAAGGTTTTGTCAGATGTTCTACGAACCAGCAAGTATGATTCAGAGCCTTTGCTTCGTACTTGTGGAATTTCAATTAGTACTAGCTTTACACAAGTGGAGGGCCGTGTCTTGCCAGCTCCAAGGTTGAAGTTTGGCAATGGTGAGGATTTCAATCCAAGAAATGGGAGATGGAATTTTAATAATAAGAAATTTGTGCAGCCAACAAAGATAGAGCGATGGGCTGTAGTGAACTTTTCTGCACGTTGTGATGTACAAGCTCTTGTTCGGGATCTGACTAGATGTGCAGAAATGAAAGGAATTCTTATAGAAGCCCCATTTGATGTATTTGGAGAAAATCCTCAGTTCAGGCGTGCCCCTCCTATGGTTAGAGTGGAGAAGATGTTTGAAGACATCCAGTCTAAACTTCCTGGAGCTCCTCAGTTCCTTCTTTGTCTTCTTCCTGAGCGGAAAAACTGTGATCTTTATGGTCCATGGAAGAAGAAGAATCTTGCTGACTTTGGAATTGTTAATCAGTGCATGTGTCCACAGAGGGTCAATGATCAATATCTTACTAATGTGTTGTTGAAGATCAATGCTAAGCTAGGTGGGTTGAATTCCTTGTTATCTGTTGAAAAATCGCCTTCTATTCCAGTTGTTTCCAAAGCTCCTTCCATTATTCTTGGGATGGACGTGTCTCATGGCTCACCCGGGCAAACTGATATTCCTTCCATTGCAGCGGTGGTAAGCTCCAGACAGTGGCCTTTGATATCAAAGTATAGGGCATGTGTCCGAACCCAGTCCGCGAAGGTTGAAATGATAGATAATTTATTCAAGCCAGTAGGTGAAAAGGAGGATGAAGGCATTATCAGGGAACTTTTGGTTGACTTCTATACAAGTTCTGGGAAGAGAAAGCCTGAAAATATAATCATATTCAGAGACGGGGTTAGTGAATCACAGTTCACTCAAGTTCTAAACATTGAGCTTAATCAAATCATTGAGGCTTGTAAATTTCTTGATGACCAGTGGAACCCCAAATTTGTTGTAATTGTTGCTCAGAAAAACCACCATACAAAATTTTTCCAGGCTGGGTCTCCCGATAATGTTCCCCCTGGAACTGTAATTGACAATAAAATTTGTCATCCACGAAATTATGATTTCTACTTGTGTGCACATGCTGGAATGATAGGGACCACCAGGCCCACGCATTACCATGTTCTGTTAGACGAGGTTGGTTTCTCTGCCGATGATCTACAGGAACTAGTGCATTCTCTGTCATATGTGTATCAGCGGAGCACCACTGCCATATCTGTTGTTGCTCCGGTATGCTATGCACACCTGGCTGCAACTCAGTTGGGACAGTTCATGAAATTTGAGGACAAGTCTGAGACTTCCTCGAGCCATGGCACTATGTCGTCGGCCGGAACTGTTCCTCAGTTACCGAAATTGCAGGACAATGTCTGCAACTCTATGTTCTTTTGTTGA 2787 0.4363 MTVLFCCFSSHPFCLDMDSSEPDGNGNEDSLLPPPPPPEVPPNVLPVKAEDMLPPEPVKKKTSRVPIARRGLGSKGSKLTLLTNHFKVNVTNNDGHFFHYSVAIFYEDGRPVEVKGVGRKVIDRVQETYDSELAGKEFAYDGEKSLFTVGPLPRNKLEFTIVLEDVTSNRNNGNCSPDGHGSPNESDRKRMRRPYRAKTFKVEISFAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKKGCLLVRQSFFHNDPMNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIRPGPVVDFLIANQNVRDPYSLDWAKAKRTLKNLRITTSPSNQEYKISGLSELPCRQQTFTLKNKGGDDGSEEVTVYDYFVNYRKIDLRYSADLPCINVGKPKRPTYFPIELCSLVSLQRYTKALTTLQRASLVEKSRQKPQERMKVLSDVLRTSKYDSEPLLRTCGISISTSFTQVEGRVLPAPRLKFGNGEDFNPRNGRWNFNNKKFVQPTKIERWAVVNFSARCDVQALVRDLTRCAEMKGILIEAPFDVFGENPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPERKNCDLYGPWKKKNLADFGIVNQCMCPQRVNDQYLTNVLLKINAKLGGLNSLLSVEKSPSIPVVSKAPSIILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKPVGEKEDEGIIRELLVDFYTSSGKRKPENIIIFRDGVSESQFTQVLNIELNQIIEACKFLDDQWNPKFVVIVAQKNHHTKFFQAGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTTRPTHYHVLLDEVGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAATQLGQFMKFEDKSETSSSHGTMSSAGTVPQLPKLQDNVCNSMFFC 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2422 928 SMART DUF1785_2 248 300 IPR014811 -
Dere04g2422 928 CDD PAZ_argonaute_like 300 413 - -
Dere04g2422 928 FunFam Protein argonaute 3 651 928 - -
Dere04g2422 928 Pfam Argonaute linker 1 domain 250 298 IPR014811 -
Dere04g2422 928 SUPERFAMILY PAZ domain 295 454 IPR036085 GO:0005515
Dere04g2422 928 Gene3D - 650 928 IPR036397 GO:0003676
Dere04g2422 928 MobiDBLite consensus disorder prediction 19 66 - -
Dere04g2422 928 Pfam PAZ domain 304 430 IPR003100 GO:0005515
Dere04g2422 928 ProSiteProfiles Piwi domain profile. 583 891 IPR003165 GO:0003676
Dere04g2422 928 Pfam Argonaute linker 2 domain 440 486 IPR032472 -
Dere04g2422 928 MobiDBLite consensus disorder prediction 170 192 - -
Dere04g2422 928 FunFam Protein argonaute 7 295 418 - -
Dere04g2422 928 Gene3D paz domain 294 418 - -
Dere04g2422 928 MobiDBLite consensus disorder prediction 29 44 - -
Dere04g2422 928 SMART Piwi_a_2 583 891 IPR003165 GO:0003676
Dere04g2422 928 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 893 - -
Dere04g2422 928 CDD Piwi_ago-like 458 885 IPR045246 -
Dere04g2422 928 Pfam Piwi domain 584 891 IPR003165 GO:0003676
Dere04g2422 928 ProSiteProfiles PAZ domain profile. 325 414 IPR003100 GO:0005515
Dere04g2422 928 Gene3D - 478 644 - -
Dere04g2422 928 SUPERFAMILY Ribonuclease H-like 568 889 IPR012337 -
Dere04g2422 928 Pfam Mid domain of argonaute 493 574 IPR032473 -
Dere04g2422 928 Pfam N-terminal domain of argonaute 79 238 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2422 Dere-ChrDere04 30226278 30234794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2422 37 928 Eukaryotic Initiation Factors Gene Family AT1G48410 35.669 4.87e-170 521