Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2411 ATGCAGGAGAAGGTCCTGAAGGTAAGAAGAAGAAAGAAGAAGAAGAAAAAGAAGAACAGGAAGAAGCAGAAGAGGACGAAGGTAGTTGGAAAAAACGACAGTGAGGAGTTTGAGATGGAGGATGAAAGGCGTGCTGAAGCGCGGGGAACCACTCTTATCAGTGTACTTCTCAGTGAAATCCCAGGGCAGAGGAACGCACCAGACCGTCAATTTCTTTCCTCAATCAAAATCTTCGCTTTCGAGGGGGAAAAATTTCTCGACTTCGCTCTGCAAACCCTAGCTCGTCTTCCGAAGCAAGATTTTACCGTCATGGCCAAGAAGCGAAAGCTGCCCCCTTCTCAACCCGAACCTACCAGCGTAGCCGAACCGCAGCCCCAGAAGCTAGGGCTGCAGATATTGTATCCGGACACTGGAGCAGCTTTGCAAGAAGAGCATAAATATGAGCGAGAAAATATGGCCGTCGATGGTGATAATAATATCGAGCAAGAAGGAGGAACGGAAGATGGAGCAGAACAAGAAAACACCGAAGAGCAAGAAGGTGAGCTTTTGGAAACTGCAGAAGCTTCGAACGATGTGGCCGTAGTTGGATCGGCTCAGGTTGAAGTTGATAGGGTTGAAGAAGGTAACGAGAATGAAGAAGGGGAGGATTTGGACGAGGAGACAGTCGAGAAGCTTGTCGAGCCCTTTACGAAGGAGCAGCTTTACTCTCTTGTAAAGCAAGCTGTGGAAACGCACCCAAATTTCTTGGAGAACATTCGTCAACTTGCGGATGTGGACCCTGCCCACCGTAAAATCTTCGTCCATGGACTTGGCTGGGATGCCACTGCTGAAATACTTGTTAGTGTGTTTGGGAAGTATGGTGAGATTGAAGATTGTAAGGCCGTCACCGACAAGTTCACTGGGAAATCCAAGGGCTATGCCTTCATCTTGTTTAAACACCGAAGTGGAGCTCGTAAGGCGCTGAAGCAGCCACAAAAGAAGATTGGAAATCGGATTACTTCTTGTCAATTGGCCTCAGCTGGACCTGTCCAGGCTCCTCCACCTGCAGCCGTACCCATGTCTGTATATACTCAGAAGAAGATCTTTGTGAGCAATGTGAGTCCGGAGCTTGATCCCCAGAAGTTGCTCGAGTTCTTTAAGCAGTTTGGGGAGATAGAGGAGGGTCCTCTGGGCCTTGATAAGCAGACGGGGAAGCCTAAGGGATTTGCACTTTTTGTATACAAGTCAGCAGAAAGTGCTAAGAAGGCTCTGGAGGAGCCCCACAAGAATTTTGAGGGCCATACTTTGTATTGTCAGAAGGCAGTTGATGGTGCTAAGGGAAATAAGGGATATCAGCATCATTCTCATCATCAGCAGCAACCTCACTACCACTCAAGAAAGGAGAAGAATAAATATTCGTCAAGTGGGCCAGGACACATGGTGGCACCATCAGCCCCTGGTCCTGCTGCGGGCTTCAATCCAGGAGTGCATCCAGTCGCGGGTTTGAATCCGGCGCTCGGACAGGCGTTGACTGCCTTGCTTACAACTCAGGGGGCTGGGTTAGGGCTCGGTAATTTGCTTGGAGGTCTTGGTGGTGCGCCTGTAAACCAGACTGGGCCTGCTGCTGGATATGGTAACCAGGCTGCTATGAGCTATGGGAACCAGCCTGGGATGCAAACGGGATACCAGAATCCACAAATGGGGCAGACCAGTGGTGTTAGGCCCCGCCCAGGTGCTGGCCCTTCTTACATGGGTCATTAG 1740 0.4994 MQEKVLKVRRRKKKKKKKNRKKQKRTKVVGKNDSEEFEMEDERRAEARGTTLISVLLSEIPGQRNAPDRQFLSSIKIFAFEGEKFLDFALQTLARLPKQDFTVMAKKRKLPPSQPEPTSVAEPQPQKLGLQILYPDTGAALQEEHKYERENMAVDGDNNIEQEGGTEDGAEQENTEEQEGELLETAEASNDVAVVGSAQVEVDRVEEGNENEEGEDLDEETVEKLVEPFTKEQLYSLVKQAVETHPNFLENIRQLADVDPAHRKIFVHGLGWDATAEILVSVFGKYGEIEDCKAVTDKFTGKSKGYAFILFKHRSGARKALKQPQKKIGNRITSCQLASAGPVQAPPPAAVPMSVYTQKKIFVSNVSPELDPQKLLEFFKQFGEIEEGPLGLDKQTGKPKGFALFVYKSAESAKKALEEPHKNFEGHTLYCQKAVDGAKGNKGYQHHSHHQQQPHYHSRKEKNKYSSSGPGHMVAPSAPGPAAGFNPGVHPVAGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPVNQTGPAAGYGNQAAMSYGNQPGMQTGYQNPQMGQTSGVRPRPGAGPSYMGH 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2411 579 MobiDBLite consensus disorder prediction 7 27 - -
Dere04g2411 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 442 IPR000504 GO:0003723
Dere04g2411 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 331 IPR000504 GO:0003723
Dere04g2411 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 429 IPR000504 GO:0003723
Dere04g2411 579 MobiDBLite consensus disorder prediction 548 564 - -
Dere04g2411 579 MobiDBLite consensus disorder prediction 548 579 - -
Dere04g2411 579 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 164 444 - -
Dere04g2411 579 MobiDBLite consensus disorder prediction 151 180 - -
Dere04g2411 579 MobiDBLite consensus disorder prediction 28 43 - -
Dere04g2411 579 Gene3D - 352 472 IPR012677 -
Dere04g2411 579 MobiDBLite consensus disorder prediction 161 180 - -
Dere04g2411 579 SUPERFAMILY RNA-binding domain, RBD 344 453 IPR035979 GO:0003676
Dere04g2411 579 Gene3D - 139 345 IPR012677 -
Dere04g2411 579 MobiDBLite consensus disorder prediction 206 221 - -
Dere04g2411 579 SUPERFAMILY RNA-binding domain, RBD 249 341 IPR035979 GO:0003676
Dere04g2411 579 MobiDBLite consensus disorder prediction 439 481 - -
Dere04g2411 579 MobiDBLite consensus disorder prediction 1 43 - -
Dere04g2411 579 MobiDBLite consensus disorder prediction 107 126 - -
Dere04g2411 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 340 IPR000504 GO:0003723
Dere04g2411 579 MobiDBLite consensus disorder prediction 201 221 - -
Dere04g2411 579 SMART rrm1_1 360 432 IPR000504 GO:0003723
Dere04g2411 579 SMART rrm1_1 264 336 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2411 Dere-ChrDere04 30143608 30154899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2411 358 524 C2H2 Transcription Factor Family AT2G19380 25.871 3.30e-08 54.7