Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2403 ATGGGCAATTCCTGCAAGAAGCCTGTTGCTCATGTTTCTTCCTCCAATTTTTCTGGAAGCTCAAAGTCTTCTAAGACCAAAAAGAATTTAAATTTTTCAGAACGTGAAGCTGCTTTGCAAAGTTCAGCATCAAATCTTGACAGACCCATCTCCAATAATCTCAAGTCCTTCAACTTCAATGATCTAAAGGAAGCCACCAAGAACTTCCGCCGAGAAAATTTAATTGGGGAGGGAGGGTTTGGGTGTGTCTTCAAGGGATGGATTAACACTAACACCTTTGCTCCCACTAAACCAGGCAGTGGAATGGTAGTGGCCATTAAGCAGCTCAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGGCAGCTTCACCATGAAAATCTGGTAAAGCTTATTGGTTATTGCTTCGATGATAAAAGTAGGCTTCTAGTTTACGAGTTCATGCAGAAAGGAAGCTTAGAGAATCATTTATTTAGAAAAAATGTTCAACCTGTACCTTGGGCAATACGGATGAATATTGCAGTTGGTGTTGCAAGAGGGTTAGCGTTCTTGCATAGTCTGGATGCAAATGTAATCTATCGTGATTTAAAGGCTTCCAACATCCTACTTGATTCAGATTTCAATCCAAAGCTTTCAGATTTTGGCTTGGCCAGAGATGGTCCAACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTAGCCACAGGTCACTTGACCCCAAGAAGTGATGTATACAGCTTTGGTGTCGTCTTACTAGAGTTACTAACCGGGAAACGAGCATTAGAAAATGAGAGACCTGGTTTTTCAGAAGAAACTCTGGTGGATTGGGCAAAGCCTTTCCTGAGCGACAGCCGGCGAGTTTTGAGAATCATGGATACAAGGTTGGGTGGCCAATACTCCAAGAAAGGAGCTCAAGCTGCAGCTGCACTTGCATTGCAGTGCCTGATTTCAGATCCCAAGCATAGACCTCCAATGGTAGATGTTCTGGCTGCTTTGGAAGGGCTCAATTCCTCAACTTCAACTCCAAGAACCCCACAATCTGGGACTCAGAATATTGCCACCAAGCATTCTAGTCATTCACAAAGGGCAATTAAAGATGCGAAGTCACTATGA 1167 0.4319 MGNSCKKPVAHVSSSNFSGSSKSSKTKKNLNFSEREAALQSSASNLDRPISNNLKSFNFNDLKEATKNFRRENLIGEGGFGCVFKGWINTNTFAPTKPGSGMVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCFDDKSRLLVYEFMQKGSLENHLFRKNVQPVPWAIRMNIAVGVARGLAFLHSLDANVIYRDLKASNILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKRALENERPGFSEETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLISDPKHRPPMVDVLAALEGLNSSTSTPRTPQSGTQNIATKHSSHSQRAIKDAKSL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2403 388 MobiDBLite consensus disorder prediction 355 388 - -
Dere04g2403 388 Pfam Protein kinase domain 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2403 388 MobiDBLite consensus disorder prediction 355 376 - -
Dere04g2403 388 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 364 - -
Dere04g2403 388 MobiDBLite consensus disorder prediction 8 30 - -
Dere04g2403 388 PANTHER OS01G0588500 PROTEIN-RELATED 28 353 - -
Dere04g2403 388 Gene3D Phosphorylase Kinase; domain 1 43 154 - -
Dere04g2403 388 Gene3D Transferase(Phosphotransferase) domain 1 155 378 - -
Dere04g2403 388 FunFam Serine/threonine-protein kinase BIK1 35 154 - -
Dere04g2403 388 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
Dere04g2403 388 CDD STKc_IRAK 75 353 - -
Dere04g2403 388 SUPERFAMILY Protein kinase-like (PK-like) 52 364 IPR011009 -
Dere04g2403 388 SMART serkin_6 69 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2403 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Dere04g2403 388 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2403 388 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2403 Dere-ChrDere04 30002715 30006436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2403 40 385 Glycoside Hydrolase AT3G07070 46.111 9.34e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere04g2403 Pkinase 3.6e-47 CL0016