Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2394 ATGAATCACTTTAGCCATAGGCATCAAAGAGTTACAGAGTTAAAACTACTTGGATACCATATTCATGGATCCATATCACCGCAAATTGGAAACCTTTCCTTTCTAAGAGTCCTAGACCTGCAGAATAACAGCTTCTATGGCAAAATTCCAGTGGAATTGGCCCAGTTGTTCCGCCTCCAGCAACTTCATCTCACAAATAACGCATTGTATATTCTTGCTTCAGAATACTTGAATGTTTCTTTCAACATGTTGGACAGCGAGGTACCAACAAAAGGTGTCTTCCAAAATGCAAGCGCAATAGTGGTGAATAGCAATAGAAAGCTTTGCGGGGGTGTCATACCAAAGGCTCTACCACGCAACCGATTCTCATCTAGCAAATTGATAGGAAGTGGAAGTTTTGGCTCTGTCTATGAAGGCATTCTTGATTCAAGAGATAGGATCAGCGTTGCTATAAAGGTCCTCAACCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCCGTGTGCAATGCACTGAAAAGTCCCAGGCACAGAAATCTGGTTAAAGTTTTGACATGTTGCTCTAGCACAGACTACAAGGGTAGTGAATTTAAAGCCCTGGTATTCGAGTACATGAAAAATGGAAGCTTAGACAAATGGCTCCATTCAGAGCAGCCAAGCACATTGGACCTTGGGCAAAGATTAAGCATCATTGTTGACATTGCCTTCGCATTACATGATCTTCATTATGAATGCGAGCAACCCATCATTCATTGTGATTTAAAGCTAAGCAATGTCCTCCTTGATGATGATATGGTTGCTCATGAAGAAGAAATGTTTGAAGATGGTTTCAATCTGCATAAGTATGTTGAAACTTCATATTCAAATGATATTTTCCAGATTCTAGACCCATCTCTTCTTCCAGGGGAAACAAAAGCTGAAGACAATAAGGAGAAGCAAACCCTCATGCATTCTAAAGTGCAAAAGTGCTTACTTTCATTTCTGAGGATTGGACTTGCTTGTTCTAATGATACTCCACAGGAAAGAATGGGTGAGGTTGATGTCACCAGGGAGCTAAATCTCATCCAAAATGACTTTCATGCTGATGAAGTCAATAGACATTAA 1104 0.4031 MNHFSHRHQRVTELKLLGYHIHGSISPQIGNLSFLRVLDLQNNSFYGKIPVELAQLFRLQQLHLTNNALYILASEYLNVSFNMLDSEVPTKGVFQNASAIVVNSNRKLCGGVIPKALPRNRFSSSKLIGSGSFGSVYEGILDSRDRISVAIKVLNLQKKGAHKSFIAVCNALKSPRHRNLVKVLTCCSSTDYKGSEFKALVFEYMKNGSLDKWLHSEQPSTLDLGQRLSIIVDIAFALHDLHYECEQPIIHCDLKLSNVLLDDDMVAHEEEMFEDGFNLHKYVETSYSNDIFQILDPSLLPGETKAEDNKEKQTLMHSKVQKCLLSFLRIGLACSNDTPQERMGEVDVTRELNLIQNDFHADEVNRH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2394 367 Gene3D Transferase(Phosphotransferase) domain 1 115 268 - -
Dere04g2394 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Dere04g2394 367 SUPERFAMILY Protein kinase-like (PK-like) 116 267 IPR011009 -
Dere04g2394 367 ProSiteProfiles Protein kinase domain profile. 122 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2394 367 Pfam Protein tyrosine and serine/threonine kinase 125 266 IPR001245 GO:0004672|GO:0006468
Dere04g2394 367 ProSitePatterns Protein kinases ATP-binding region signature. 128 152 IPR017441 GO:0005524
Dere04g2394 367 SMART serkin_6 122 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2394 367 PANTHER OS04G0122200 PROTEIN 9 69 - -
Dere04g2394 367 SUPERFAMILY L domain-like 8 92 - -
Dere04g2394 367 Gene3D Ribonuclease Inhibitor 2 114 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2394 Dere-ChrDere04 29877304 29879988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2394 5 69 Receptor kinase-like Gene Family AT3G47580 49.231 5.54e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere04g2394 PK_Tyr_Ser-Thr 9.7e-24 CL0016