Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2393 ATGCAAATGAATTACACGTCTTCTTCTGCACTCTCTCCACTTTCTCTCTCCCTCCCTCCTTCCCTCCCTTGCTTCCTTCCTTTGGGGCTTAGGATCTCACGCCTCTATGCTTCGAATCTTTTTCTTTACTTAGTTCTTTCGTCTTTTGTTTTCTCCCCAAATCCTTTGTCTGGTGAAAGAGAAAGGATGTCAAGTGGAGCAACACACTGGTGTCATGGATGCAGCCGGCCAATTATACTTGATGGGAGAAATTTCATTTGCCCTTACTGTGATGGAGGCTTTGTGCAAGAACTTAATGAACTGCAAATAATGCCACAGCTGGAAGAGTTTCTTCAAGTACCAGACATTTTTGATGCCATACATGCTTTTATGGGGAGAAGAGGTGCTGAACCAAGAGTTGGGCTCCAAGATGCAGTTGATAGTTTCATGAGGCATTCTTTCATGAGGCAGAGAATGGCTGGACGAAACCCAAACTTTGATGTCAGAGGGAGATCTAGTTCTGGCCCAGGTCCTGATCAGAGTTGGGGTGTTATTAGTCCTGTTCCTTTTCTGATATTTCACGGTCAGGTTCCTGGGTTCACCTTCACTAATGGCATCCCTAGAGGTGGTCCTAGGCATGTTGATGTTGATGACTACTTTATGGGGTCTGGACTGGAACAACTTATTGAACAGCTCACTCTGAATGATCGGCATGGTCCGCCCCCAGCCTCACGTTCTTCCATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCTGACTCACACTGTCCAGTTTGTCAAGACAGATTTGAGCTGGGCTCTGAAGCAAGGGAGATGCCATGTAATCATATTTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCGCCTCATGGACTTGGTAGTTCTCATGGTAGTCGAAACTTGGGAGGAAGGAATGCCAACTGCAGTGTCGACAATGATAACTCCAGGGGGAGGGAGCATAGCCAGCAGAACCAAAGAAGGAGAAATCCATCATCTTTTCGTGTTGAGCTGCCACCTTATGGACATGGTAGTTCTGTTGGTAGTCAAAACTTGGGAGGAAGGAATGCCAACAGCAGTGTTGACAATGATAGCTCTAGGGTGAGGGAGCATAGCCAGCAGAACCAAGGAAGGAGAAATCTGTTTTCGTTTTTGTGGCCATTCCGCTCTTCTAGTTCAAACACTAATCATTATGCTGAGACTGGGGGAAGCAACTCTTCAACCAGTCATGACCAGAATAATGGAACTAGCTATAGTAGATGGCCCTATGATCAATGA 1326 0.4608 MQMNYTSSSALSPLSLSLPPSLPCFLPLGLRISRLYASNLFLYLVLSSFVFSPNPLSGERERMSSGATHWCHGCSRPIILDGRNFICPYCDGGFVQELNELQIMPQLEEFLQVPDIFDAIHAFMGRRGAEPRVGLQDAVDSFMRHSFMRQRMAGRNPNFDVRGRSSSGPGPDQSWGVISPVPFLIFHGQVPGFTFTNGIPRGGPRHVDVDDYFMGSGLEQLIEQLTLNDRHGPPPASRSSIDAMPTIRITQAHLRSDSHCPVCQDRFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPHGLGSSHGSRNLGGRNANCSVDNDNSRGREHSQQNQRRRNPSSFRVELPPYGHGSSVGSQNLGGRNANSSVDNDSSRVREHSQQNQGRRNLFSFLWPFRSSSSNTNHYAETGGSNSSTSHDQNNGTSYSRWPYDQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2393 441 MobiDBLite consensus disorder prediction 311 394 - -
Dere04g2393 441 Pfam zinc-ribbon 68 98 IPR039525 GO:0061630
Dere04g2393 441 MobiDBLite consensus disorder prediction 315 329 - -
Dere04g2393 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 307 IPR013083 -
Dere04g2393 441 Pfam Ring finger domain 259 301 IPR001841 -
Dere04g2393 441 MobiDBLite consensus disorder prediction 360 379 - -
Dere04g2393 441 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
Dere04g2393 441 SMART ring_2 260 300 IPR001841 -
Dere04g2393 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 142 305 - -
Dere04g2393 441 SUPERFAMILY RING/U-box 240 306 - -
Dere04g2393 441 MobiDBLite consensus disorder prediction 411 441 - -
Dere04g2393 441 FunFam E3 ubiquitin-protein ligase RING1-like 224 307 - -
Dere04g2393 441 CDD RING-H2_RNF126-like 260 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2393 Dere-ChrDere04 29849736 29853539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2393 204 318 C3H Transcription Factor Family AT5G01980 41.026 4.98e-25 105