Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2355 ATGGCAAAGCGTCTGATCCCACTCTTCGATCGCATTTTGGTCGAGAAAATCGTTCCCCCATCCAAGACTAATTCTGGAATCTTACTCCCTGAGAAAACCACCAAGCTCAACTCCGGAAAAGTTGTGGCAGTTGGTCAAGGAGGTCGTGATAGAGATGGGAAGCTTATTCCTGTAAGTATAAAGGAAGGAGACATGGTTCTTTTGCCTGAATATGGAGGAACTGAAGTGAAACTTGAGGATAAAGAGTATCATCTATATACAGAAGACGACATCTTGGGAACCCTTCATGATTAA 294 0.432 MAKRLIPLFDRILVEKIVPPSKTNSGILLPEKTTKLNSGKVVAVGQGGRDRDGKLIPVSIKEGDMVLLPEYGGTEVKLEDKEYHLYTEDDILGTLHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2355 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Dere04g2355 97 ProSitePatterns Chaperonins cpn10 signature. 5 29 IPR018369 GO:0005524|GO:0006457
Dere04g2355 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 FunFam 10 kDa chaperonin, mitochondrial 1 97 - -
Dere04g2355 97 Hamap Co-chaperonin GroES [groES]. 4 96 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Dere04g2355 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Dere04g2355 97 Pfam Chaperonin 10 Kd subunit 5 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2355 Dere-ChrDere04 28647327 28649939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2355 7 96 Calmodulin-binding Proteins AT5G20720 39.560 4.06e-11 55.5