Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2316 ATGAGACCAGTAGCTTCTTCGGTTTTCATTCTACCCTCTGGATCTGTTACTATGACTTCACTCGTGAAGATCGAAGGCGAACAACACCCCGTCAACGATTTTCAGGATTTGTCGCTCAAGGACCAGAGTGAAATACGAAGTGAAGTAGAGATTCTCCGGGTGGGCTCTGGAAACCATGGGGGAATCTGTGCGATTTGCTTGGATAAGATAGTACTGCAGGAAACTGCGCTCGTTAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATTCTTCACTGGGCCACGTATAGCTCGAAAGTCACCTGCCCACAATGTAAACATCCATTTGAGTTTCTTAATGTCCATCGCTCGCTTGATGGCAGCCTTCATGACTACATGTTCGAGGAAAGTGTTTGTCTACTTCTTAGGGCTTCATGGTTTAAACCTTTAAATGTGGAAAATCATGAAGAACATGGAGATATCTATGATGACATTGAGGACTATTATTATGAATATGAGGATGAGGAGGATGACCTAGATGATGTTTACTACGGTGGCAGCTCATCAAGTATACGCATTGGCAACCGGAGATGGGGAGACAATGGTTATGTTAGGGCTGGGCGTCAACAAGCCAGGCCAGTCTATCAACCAAACTCCCAAAGCTCAGGAGCAAGTTCATCCCGTGAGCCTAGGAACAAAGAGGCTGTAAAAGCTGCTACAACCGGGCGACGGGCCAAGCGAGCACTGAAACGGGAAGCTGCCGATAAGGCTGCTGCAGAGAAGCATCAGCAGCATCTGGTGAGGTTGGGCAGGAAGTGA 798 0.4737 MRPVASSVFILPSGSVTMTSLVKIEGEQHPVNDFQDLSLKDQSEIRSEVEILRVGSGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILHWATYSSKVTCPQCKHPFEFLNVHRSLDGSLHDYMFEESVCLLLRASWFKPLNVENHEEHGDIYDDIEDYYYEYEDEEDDLDDVYYGGSSSSIRIGNRRWGDNGYVRAGRQQARPVYQPNSQSSGASSSREPRNKEAVKAATTGRRAKRALKREAADKAAAEKHQQHLVRLGRK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2316 265 SUPERFAMILY RING/U-box 62 112 - -
Dere04g2316 265 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Dere04g2316 265 ProSiteProfiles Zinc finger RING-type profile. 63 106 IPR001841 -
Dere04g2316 265 SMART ring_2 63 105 IPR001841 -
Dere04g2316 265 MobiDBLite consensus disorder prediction 205 222 - -
Dere04g2316 265 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 265 - -
Dere04g2316 265 Pfam Ring finger domain 63 106 IPR001841 -
Dere04g2316 265 CDD RING-HC_Topors 63 109 - -
Dere04g2316 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 175 IPR013083 -
Dere04g2316 265 MobiDBLite consensus disorder prediction 201 265 - -
Dere04g2316 265 MobiDBLite consensus disorder prediction 223 258 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2316 18 265 C3H Transcription Factor Family AT5G19430 58.755 7.27e-89 262