Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2314 ATGGGTTTTGAAGGAACCCACCGTCTCAAAAAAGAAGCAGAAGAAAGCAGAACCGCAGAAGAAGATACAGCAGAAGAAGCAGAAGTGGTTCGTTTCTCTCTCTCTTCAATTCCTGTAGAGAGAGATAGAGACAGTGAAACACCATACACCAAAAGTCCACCCACCCCCAACAACAGACATATCAAGATCTATCTATCTATCTCTGCCTTTCCTTCCCGAATTCGATCACCCACTCTTCTCTTCTCTCAGCAAATTCCCTCTGATAAATTTGCAGAGAGCCCACTTGTTGTGGCTACCACCAGGAGGTTGCCTTCAGATTCTGGTGCTTTTGCTGACTGGGCAGCCTCTTCTACTGGCCGTGCTGCCCCCGCCGATGAACTCTCCCTCGGTTTCAATGCCGGACCTGCTGCTGCGGCCGGGGGAACGGCCACCGGACCCACCTCCGGAATGTGGTCCGGCTCTTCAAGGTCAATCAATTACGGTCTCACGCCAGAGATGGGAGGCATGCTCGGCCTGCGCGACCTCTTCGTGGTTGCGCCCGCGTCCTCCTTTCACCATCACCACCATCACCACCATCACCATGAGCAGTCCGTCATGACCGATCCTCATTCGGTCAACGGTTCGAACCCCGCGACTGCGCTCGGGGTTGGCGTTATTCCTTTGCTAACCGCGACGCCATGTCTTGGCCCAGCGAGCATCGGCGCGGAAAATGAGACCTTAATGAATAATCGAAGCCGAGGTGGGGGAATTCAGCTGTGGCAAGACCAAGAGTCTGAACATGGTCATTATTTGAAGAAGCATGGAACGATGTTCGAGCTAAACGACAGTTCTGGGAATCTGGTTCAGAATGAGAATGGGGTGGCTGTTTCCGCTCAAAACAGCGGCGGAGGGACGACGTGTCAAGACTGTGGGAACCAAGCGAAGAAGGATTGTGGTTACAGGAGGTGCAGGACTTGCTGCAAGAGTCGGAATTACGATTGCCCTACTCACGTGAAGAGCACATGGGTGCCGGAGTCTCGGCGGAGGGAACGCCGTCTCATGGCGGCAGCAGCGGTGACAGCTGGTGGCTCTAGTGGGGCTACTTCTGGAGCTAAAAAACCTAGACTCATTACATCACAACAACAGGCCACGACAACCTCGCATACTTCCACTTCGAATACCACTCCTCCTAGGAGCTTTGACACTAGCTCTAGCCACCAAGATGCGGGTTTCAAGGAACCATTACCAGGTCAAGTTCGAGCGCCGGCGGTGTTCAAGTGTGTTAGGGTGACGGCGGTGGATGACGGCCAGGATGAGTACGCCTATCAGGCTGTTGTTAAGATTGGTGGCCATGTATTCAAAGGGTTTCTATATGATCAAGGGGTTGAAAGTAGAGATGTTTATCCTAATTTAGCGGAGCTTCACTTAGGAGGCGGCGGCAGCGGTGGAGGCGGAGGTGTTGACGGTAATGGGAGAAATGGGGCTGCTTCTTCATCCCCAATGCTGGATCCATCTGATGTTTATGCAGCTTCAGGTGGAGGCTTACTTGGAGGAGGTTCAACTTATGGTAATCCAATAAATTGA 1563 0.5266 MGFEGTHRLKKEAEESRTAEEDTAEEAEVVRFSLSSIPVERDRDSETPYTKSPPTPNNRHIKIYLSISAFPSRIRSPTLLFSQQIPSDKFAESPLVVATTRRLPSDSGAFADWAASSTGRAAPADELSLGFNAGPAAAAGGTATGPTSGMWSGSSRSINYGLTPEMGGMLGLRDLFVVAPASSFHHHHHHHHHHEQSVMTDPHSVNGSNPATALGVGVIPLLTATPCLGPASIGAENETLMNNRSRGGGIQLWQDQESEHGHYLKKHGTMFELNDSSGNLVQNENGVAVSAQNSGGGTTCQDCGNQAKKDCGYRRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLMAAAAVTAGGSSGATSGAKKPRLITSQQQATTTSHTSTSNTTPPRSFDTSSSHQDAGFKEPLPGQVRAPAVFKCVRVTAVDDGQDEYAYQAVVKIGGHVFKGFLYDQGVESRDVYPNLAELHLGGGGSGGGGGVDGNGRNGAASSSPMLDPSDVYAASGGGLLGGGSTYGNPIN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2314 520 MobiDBLite consensus disorder prediction 351 408 - -
Dere04g2314 520 MobiDBLite consensus disorder prediction 475 496 - -
Dere04g2314 520 Pfam Domain of unknown function (DUF702) 297 456 - -
Dere04g2314 520 MobiDBLite consensus disorder prediction 186 207 - -
Dere04g2314 520 MobiDBLite consensus disorder prediction 355 402 - -
Dere04g2314 520 NCBIfam putative zinc finger domain, LRP1 type 299 341 IPR006510 -
Dere04g2314 520 MobiDBLite consensus disorder prediction 1 28 - -
Dere04g2314 520 MobiDBLite consensus disorder prediction 1 57 - -
Dere04g2314 520 Coils Coil 10 30 - -
Dere04g2314 520 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 183 504 IPR007818 GO:0003700|GO:0006355
Dere04g2314 520 NCBIfam LRP1 C-terminal domain 408 455 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2314 Dere-ChrDere04 27775073 27777489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2314 97 500 C2H2 Transcription Factor Family AT5G12330 48.926 9.24e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere04g2314 DUF702 3.4e-59 No_clan