Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere04g2311 | ATGATCAGATCACAGTTTCCTAGATTTTCTCATAATTTTCCCGCACTTTCTAGCTGCGATTTTTTTCTCCGTGACACTGACCTCAGCAAAGTGACCCCTGAATCACTGGAATCTATGAAGTTTTCTCCTCATTTCTCGATCGGCTTTTCTTCATCACCTAGCAAAAGTGCTTCTCTGTTTGTGGTGATGTCACGGACTGATAGAATGGCTTCGGATCTCAACAGAGCTGGTCCCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAGAAAGGGGCTTACTTGCTAAAATACGGAAGAAGGGGGAAGCCCAAGTGTTGCCCGTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTATCAGGAAAAGAGGAGAAACAGCTTAAACTAAGCCATATTTCTAGAATTATATCAGGACAACGTACGCCAATCTTTCAAAGATATCCACGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTCTGGTTCAGTGGTTTGAAAGCACTAATATCACGTAGCCATCACCAGAAGTGGAGAACAGAGTCTAGAAGTGATGGTTTTCCATCTGAGGCTAATAGTCCCAGAACATACACTAGAAGAAGTTCCCCGTTAAATTCTCCATTTGGTAGCAACGAAAGCTTGCAAAAGGACAATGGGGATCACCTTCCCCTTCATAGCCCCTATGAGAGCCCCCCTAAGAATGGTTTGGACAAAACATTGTCTGATGTGATTTTGTATGCCGTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCTAGTGGTTCAGTTCACTCAGTGTCATCAGGAGGATCAAATAGTGTACATGGTCACTTGAGGGCTATGGGCATGGATACTTTTAGAGTAAGTCTATCAAGTGCTGTAAGCTCGTCCAGCCAGGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGAGTTCTGGGTGGTGGGACTCATCATCTTGGTGGAAAAATGGATTCTCTATTCCCCAAAGCCTTGGAATCTGCGGTAGTACTTGATGTACAAAACATTGCTTGTGGTGGGCGACATGCTTCCTTGGTGACCAAGCAAGGAGAAATTTTCTCCTGGGGGGAGGAATCTGGAGGCAGGCTTGGGCATGGTGTCGATTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTCTAAGTAATACCAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACGCTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAACTATGGTCTTCTTGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGACCATGGCACACTGCTGTTGTTACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGGGACCGAAAAAATGTTTCAATACCACGGGAAGTAGAGTCCCTAAAGGGTCTTCGTACTGTGCGGGCTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCTAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGTTCTTGTTGAACCTAACTTTTGTCAAGTTGCGTGTGGACACAGTCTGACTGTTGCACTTACTACCTCAGGCCATGTCTATACTATGGGTAGTCCTGTCTATGGCCAGCTAGGAAATCTTCAAGCCGATGGGAAGTTACCAACACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTGACTTCAAGGACTGAAGTTTACACATGGGGCAAAGGTGCAAATGGTTGTTTAGGCCGTGGGGATACAGAGGATAAAAATATGCCAATGTTAGTTGAAGCTCTGAAAGACAAACAAGTCAAGAGTATTGCTTGTGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGTCTCCGGTGTTGACCAGTCCATGTGTTCTGGCTGTCGTTTGCCTTTTAATTTCAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTATAATAAACTAAGGAAAACTATTGAAACTGATTCTTCGTCCCATTCTTCTTTGAGCAGAAGAGGAAGTATCAATCAGGGGCTGCCTGAGTTTAATGATAAGGATGATAAGTTTGATTCCAGATCTCGAAATCAGCTTGCTAGGTTTTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCACGTCTTCAAAGAAAACCAAGAAATTGGAATTCAACAGTAGTCGTGTCTCGCCCATTCCAAATGGTGTTTCCCAGTGGGGAGCATTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGTGCAACATCTCCAATATCTAGACATCCTAGTCCTCCTCGTTCAACAACTCCCACCCCAACACTTGGAGGACTTACGTCCCCAAAGATAGTTGTGGACGATGTTAAGAGGACAAATGATAGCCTTAGCCAGGAGATAATTAAATTAAGAGCACAGGTGGAAAATATGACTCGCAAAACACAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCAATAGTATTTGCTGGTGACGAAACTGCCAAGTGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTACCCAGTTGAAAGACATGGCTGAGAGGCTACCTGTAGGGGCATCTAGGAATGTGAAATCACCTTCTGTTGCTTCCTTTGGATTAAATCCCGGTTCCAATGAAGTCCTCAATTCTTCTATTGATGGATTAAATATTCAAGCCACTCCCACTAGCCTAGAACTGGACTTAGCGGTATTGAACAACCAGTTGCTTTCAAATGGATTGAGCACCATCAGTAACCGAAGTGCAGGTCACAACAAACAGAGCCAGTTAGATGCAACAAATAGAAATTGGAGCAGAACTAAGGAAATTGAGTCTCGTAATGAGACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTTACCTACCTCTCAGGAGGCGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAGCAGTACAATGTACGTATGACTGACAAGTCAGCTGTTGGTGTTGGGAGTGAGGACCTGGCTCATTGA | 3507 | 0.4366 | MIRSQFPRFSHNFPALSSCDFFLRDTDLSKVTPESLESMKFSPHFSIGFSSSPSKSASLFVVMSRTDRMASDLNRAGPVERDIEQAITALKKGAYLLKYGRRGKPKCCPFRLSNDESVLIWLSGKEEKQLKLSHISRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHQKWRTESRSDGFPSEANSPRTYTRRSSPLNSPFGSNESLQKDNGDHLPLHSPYESPPKNGLDKTLSDVILYAVPPKGFFPPDSASGSVHSVSSGGSNSVHGHLRAMGMDTFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHHLGGKMDSLFPKALESAVVLDVQNIACGGRHASLVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSIPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAVLVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNLQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGCLGRGDTEDKNMPMLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTIETDSSSHSSLSRRGSINQGLPEFNDKDDKFDSRSRNQLARFSSMESLKQVESTSSKKTKKLEFNSSRVSPIPNGVSQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRHPSPPRSTTPTPTLGGLTSPKIVVDDVKRTNDSLSQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIVFAGDETAKCKAAKEVIKSLTTQLKDMAERLPVGASRNVKSPSVASFGLNPGSNEVLNSSIDGLNIQATPTSLELDLAVLNNQLLSNGLSTISNRSAGHNKQSQLDATNRNWSRTKEIESRNETEWVEQDEPGVYITLTYLSGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMTDKSAVGVGSEDLAH | 1168 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere04g2311 | 1168 | ProSiteProfiles | BRX domain profile. | 1095 | 1150 | IPR013591 | - | |
Dere04g2311 | 1168 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 301 | 548 | - | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 663 | 714 | IPR000408 | - | |
Dere04g2311 | 1168 | MobiDBLite | consensus disorder prediction | 894 | 920 | - | - | |
Dere04g2311 | 1168 | Pfam | Pleckstrin homology domain | 84 | 190 | IPR001849 | - | |
Dere04g2311 | 1168 | Coils | Coil | 925 | 966 | - | - | |
Dere04g2311 | 1168 | MobiDBLite | consensus disorder prediction | 820 | 835 | - | - | |
Dere04g2311 | 1168 | Pfam | Unstructured region between BRX_N and BRX domain | 1017 | 1088 | - | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 440 | 494 | IPR000408 | - | |
Dere04g2311 | 1168 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1094 | 1149 | IPR013591 | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 495 | 546 | IPR000408 | - | |
Dere04g2311 | 1168 | Gene3D | - | 450 | 712 | IPR009091 | - | |
Dere04g2311 | 1168 | Gene3D | - | 82 | 199 | IPR011993 | - | |
Dere04g2311 | 1168 | Pfam | Transcription factor BRX N-terminal domain | 976 | 1009 | IPR027988 | - | |
Dere04g2311 | 1168 | CDD | PH_PLC_plant-like | 81 | 191 | - | - | |
Dere04g2311 | 1168 | SUPERFAMILY | RCC1/BLIP-II | 329 | 716 | IPR009091 | - | |
Dere04g2311 | 1168 | MobiDBLite | consensus disorder prediction | 787 | 802 | - | - | |
Dere04g2311 | 1168 | CDD | FYVE_like_SF | 724 | 777 | - | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 387 | IPR000408 | - | |
Dere04g2311 | 1168 | SMART | fyve_4 | 713 | 782 | IPR000306 | GO:0046872 | |
Dere04g2311 | 1168 | MobiDBLite | consensus disorder prediction | 199 | 253 | - | - | |
Dere04g2311 | 1168 | MobiDBLite | consensus disorder prediction | 787 | 851 | - | - | |
Dere04g2311 | 1168 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 388 | 436 | IPR000408 | - | |
Dere04g2311 | 1168 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 495 | 543 | IPR000408 | - | |
Dere04g2311 | 1168 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 439 | 491 | IPR000408 | - | |
Dere04g2311 | 1168 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 664 | 711 | IPR000408 | - | |
Dere04g2311 | 1168 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 558 | 607 | IPR000408 | - | |
Dere04g2311 | 1168 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 610 | 659 | IPR000408 | - | |
Dere04g2311 | 1168 | SUPERFAMILY | PH domain-like | 82 | 190 | - | - | |
Dere04g2311 | 1168 | SMART | PH_update | 90 | 193 | IPR001849 | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 388 | 439 | IPR000408 | - | |
Dere04g2311 | 1168 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 549 | 720 | - | - | |
Dere04g2311 | 1168 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 713 | 794 | IPR013083 | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 719 | 781 | IPR017455 | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 559 | 610 | IPR000408 | - | |
Dere04g2311 | 1168 | Gene3D | - | 279 | 449 | IPR009091 | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 611 | 662 | IPR000408 | - | |
Dere04g2311 | 1168 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 721 | 789 | - | - | |
Dere04g2311 | 1168 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 126 | 1000 | - | - | |
Dere04g2311 | 1168 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | - | - | |
Dere04g2311 | 1168 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 481 | 491 | IPR000408 | - | |
Dere04g2311 | 1168 | MobiDBLite | consensus disorder prediction | 205 | 237 | - | - | |
Dere04g2311 | 1168 | Pfam | FYVE zinc finger | 715 | 781 | IPR000306 | GO:0046872 | |
Dere04g2311 | 1168 | SUPERFAMILY | FYVE/PHD zinc finger | 715 | 786 | IPR011011 | - | |
Dere04g2311 | 1168 | Coils | Coil | 981 | 1001 | - | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 600 | 618 | IPR000408 | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 658 | 679 | IPR000408 | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 390 | 406 | IPR000408 | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 481 | 497 | IPR000408 | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 371 | 384 | IPR000408 | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 497 | 511 | IPR000408 | - | |
Dere04g2311 | 1168 | PRINTS | Chromosome condensation regulator RCC1 signature | 440 | 456 | IPR000408 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere04g2311 | Dere-ChrDere04 | 27667342 | 27676521 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere04g2311 | 985 | 1159 | Major Intrinsic Protein MIP | AT1G31880 | 28.804 | 2.29e-13 | 71.2 |