Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2311 ATGATCAGATCACAGTTTCCTAGATTTTCTCATAATTTTCCCGCACTTTCTAGCTGCGATTTTTTTCTCCGTGACACTGACCTCAGCAAAGTGACCCCTGAATCACTGGAATCTATGAAGTTTTCTCCTCATTTCTCGATCGGCTTTTCTTCATCACCTAGCAAAAGTGCTTCTCTGTTTGTGGTGATGTCACGGACTGATAGAATGGCTTCGGATCTCAACAGAGCTGGTCCCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAGAAAGGGGCTTACTTGCTAAAATACGGAAGAAGGGGGAAGCCCAAGTGTTGCCCGTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTATCAGGAAAAGAGGAGAAACAGCTTAAACTAAGCCATATTTCTAGAATTATATCAGGACAACGTACGCCAATCTTTCAAAGATATCCACGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTCTGGTTCAGTGGTTTGAAAGCACTAATATCACGTAGCCATCACCAGAAGTGGAGAACAGAGTCTAGAAGTGATGGTTTTCCATCTGAGGCTAATAGTCCCAGAACATACACTAGAAGAAGTTCCCCGTTAAATTCTCCATTTGGTAGCAACGAAAGCTTGCAAAAGGACAATGGGGATCACCTTCCCCTTCATAGCCCCTATGAGAGCCCCCCTAAGAATGGTTTGGACAAAACATTGTCTGATGTGATTTTGTATGCCGTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCTAGTGGTTCAGTTCACTCAGTGTCATCAGGAGGATCAAATAGTGTACATGGTCACTTGAGGGCTATGGGCATGGATACTTTTAGAGTAAGTCTATCAAGTGCTGTAAGCTCGTCCAGCCAGGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGAGTTCTGGGTGGTGGGACTCATCATCTTGGTGGAAAAATGGATTCTCTATTCCCCAAAGCCTTGGAATCTGCGGTAGTACTTGATGTACAAAACATTGCTTGTGGTGGGCGACATGCTTCCTTGGTGACCAAGCAAGGAGAAATTTTCTCCTGGGGGGAGGAATCTGGAGGCAGGCTTGGGCATGGTGTCGATTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTCTAAGTAATACCAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACGCTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAACTATGGTCTTCTTGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGACCATGGCACACTGCTGTTGTTACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGGGACCGAAAAAATGTTTCAATACCACGGGAAGTAGAGTCCCTAAAGGGTCTTCGTACTGTGCGGGCTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCTAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGTTCTTGTTGAACCTAACTTTTGTCAAGTTGCGTGTGGACACAGTCTGACTGTTGCACTTACTACCTCAGGCCATGTCTATACTATGGGTAGTCCTGTCTATGGCCAGCTAGGAAATCTTCAAGCCGATGGGAAGTTACCAACACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTGACTTCAAGGACTGAAGTTTACACATGGGGCAAAGGTGCAAATGGTTGTTTAGGCCGTGGGGATACAGAGGATAAAAATATGCCAATGTTAGTTGAAGCTCTGAAAGACAAACAAGTCAAGAGTATTGCTTGTGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGTCTCCGGTGTTGACCAGTCCATGTGTTCTGGCTGTCGTTTGCCTTTTAATTTCAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTATAATAAACTAAGGAAAACTATTGAAACTGATTCTTCGTCCCATTCTTCTTTGAGCAGAAGAGGAAGTATCAATCAGGGGCTGCCTGAGTTTAATGATAAGGATGATAAGTTTGATTCCAGATCTCGAAATCAGCTTGCTAGGTTTTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCACGTCTTCAAAGAAAACCAAGAAATTGGAATTCAACAGTAGTCGTGTCTCGCCCATTCCAAATGGTGTTTCCCAGTGGGGAGCATTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGTGCAACATCTCCAATATCTAGACATCCTAGTCCTCCTCGTTCAACAACTCCCACCCCAACACTTGGAGGACTTACGTCCCCAAAGATAGTTGTGGACGATGTTAAGAGGACAAATGATAGCCTTAGCCAGGAGATAATTAAATTAAGAGCACAGGTGGAAAATATGACTCGCAAAACACAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCAATAGTATTTGCTGGTGACGAAACTGCCAAGTGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTACCCAGTTGAAAGACATGGCTGAGAGGCTACCTGTAGGGGCATCTAGGAATGTGAAATCACCTTCTGTTGCTTCCTTTGGATTAAATCCCGGTTCCAATGAAGTCCTCAATTCTTCTATTGATGGATTAAATATTCAAGCCACTCCCACTAGCCTAGAACTGGACTTAGCGGTATTGAACAACCAGTTGCTTTCAAATGGATTGAGCACCATCAGTAACCGAAGTGCAGGTCACAACAAACAGAGCCAGTTAGATGCAACAAATAGAAATTGGAGCAGAACTAAGGAAATTGAGTCTCGTAATGAGACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTTACCTACCTCTCAGGAGGCGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAGCAGTACAATGTACGTATGACTGACAAGTCAGCTGTTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3507 0.4366 MIRSQFPRFSHNFPALSSCDFFLRDTDLSKVTPESLESMKFSPHFSIGFSSSPSKSASLFVVMSRTDRMASDLNRAGPVERDIEQAITALKKGAYLLKYGRRGKPKCCPFRLSNDESVLIWLSGKEEKQLKLSHISRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHQKWRTESRSDGFPSEANSPRTYTRRSSPLNSPFGSNESLQKDNGDHLPLHSPYESPPKNGLDKTLSDVILYAVPPKGFFPPDSASGSVHSVSSGGSNSVHGHLRAMGMDTFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHHLGGKMDSLFPKALESAVVLDVQNIACGGRHASLVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSIPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAVLVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNLQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGCLGRGDTEDKNMPMLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTIETDSSSHSSLSRRGSINQGLPEFNDKDDKFDSRSRNQLARFSSMESLKQVESTSSKKTKKLEFNSSRVSPIPNGVSQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRHPSPPRSTTPTPTLGGLTSPKIVVDDVKRTNDSLSQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIVFAGDETAKCKAAKEVIKSLTTQLKDMAERLPVGASRNVKSPSVASFGLNPGSNEVLNSSIDGLNIQATPTSLELDLAVLNNQLLSNGLSTISNRSAGHNKQSQLDATNRNWSRTKEIESRNETEWVEQDEPGVYITLTYLSGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMTDKSAVGVGSEDLAH 1168
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2311 1168 ProSiteProfiles BRX domain profile. 1095 1150 IPR013591 -
Dere04g2311 1168 FunFam PH, RCC1 and FYVE domains-containing protein 1 301 548 - -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 663 714 IPR000408 -
Dere04g2311 1168 MobiDBLite consensus disorder prediction 894 920 - -
Dere04g2311 1168 Pfam Pleckstrin homology domain 84 190 IPR001849 -
Dere04g2311 1168 Coils Coil 925 966 - -
Dere04g2311 1168 MobiDBLite consensus disorder prediction 820 835 - -
Dere04g2311 1168 Pfam Unstructured region between BRX_N and BRX domain 1017 1088 - -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 494 IPR000408 -
Dere04g2311 1168 Pfam Transcription factor regulating root and shoot growth via Pin3 1094 1149 IPR013591 -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Dere04g2311 1168 Gene3D - 450 712 IPR009091 -
Dere04g2311 1168 Gene3D - 82 199 IPR011993 -
Dere04g2311 1168 Pfam Transcription factor BRX N-terminal domain 976 1009 IPR027988 -
Dere04g2311 1168 CDD PH_PLC_plant-like 81 191 - -
Dere04g2311 1168 SUPERFAMILY RCC1/BLIP-II 329 716 IPR009091 -
Dere04g2311 1168 MobiDBLite consensus disorder prediction 787 802 - -
Dere04g2311 1168 CDD FYVE_like_SF 724 777 - -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 387 IPR000408 -
Dere04g2311 1168 SMART fyve_4 713 782 IPR000306 GO:0046872
Dere04g2311 1168 MobiDBLite consensus disorder prediction 199 253 - -
Dere04g2311 1168 MobiDBLite consensus disorder prediction 787 851 - -
Dere04g2311 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 388 436 IPR000408 -
Dere04g2311 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 495 543 IPR000408 -
Dere04g2311 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 439 491 IPR000408 -
Dere04g2311 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 664 711 IPR000408 -
Dere04g2311 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 558 607 IPR000408 -
Dere04g2311 1168 Pfam Regulator of chromosome condensation (RCC1) repeat 610 659 IPR000408 -
Dere04g2311 1168 SUPERFAMILY PH domain-like 82 190 - -
Dere04g2311 1168 SMART PH_update 90 193 IPR001849 -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 388 439 IPR000408 -
Dere04g2311 1168 FunFam PH, RCC1 and FYVE domains-containing protein 1 549 720 - -
Dere04g2311 1168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 794 IPR013083 -
Dere04g2311 1168 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 719 781 IPR017455 -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Dere04g2311 1168 Gene3D - 279 449 IPR009091 -
Dere04g2311 1168 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 611 662 IPR000408 -
Dere04g2311 1168 FunFam Putative E3 ubiquitin-protein ligase HERC1 721 789 - -
Dere04g2311 1168 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 126 1000 - -
Dere04g2311 1168 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Dere04g2311 1168 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 481 491 IPR000408 -
Dere04g2311 1168 MobiDBLite consensus disorder prediction 205 237 - -
Dere04g2311 1168 Pfam FYVE zinc finger 715 781 IPR000306 GO:0046872
Dere04g2311 1168 SUPERFAMILY FYVE/PHD zinc finger 715 786 IPR011011 -
Dere04g2311 1168 Coils Coil 981 1001 - -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 600 618 IPR000408 -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 658 679 IPR000408 -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 481 497 IPR000408 -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 371 384 IPR000408 -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 497 511 IPR000408 -
Dere04g2311 1168 PRINTS Chromosome condensation regulator RCC1 signature 440 456 IPR000408 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere04g2311 Dere-ChrDere04 27667342 27676521 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2311 985 1159 Major Intrinsic Protein MIP AT1G31880 28.804 2.29e-13 71.2