Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2301 ATGTCTGAGAGTGATTCTACTAAGCTTCTAGCATTATGGCGTATTCTCTGCATATTCTTCTGTGTTGCTTCGTTTGCATCTGCTGCTGCTGAAGATAACGAAGCAAATGCACTGTTGAAGTGGAAAGCCAGCCTTACCAAGCAAAGCCAAGCCACCTTGTCTTCTTGGATCAATGGCACTAATCCTTGCAGAAACTGGAAAGGGATTTCATGTGATCAGTCTATGTCTGTGGTCAATACAAGTCTTGCAAATCTTGGCCTTCAAGGTACACTTTACAATCTTAGCTTCGCTTCCTTCCCTAACCTCCTCTATTTTGATATAGGTCTCAACCACTTCTATGGAAACATTCCCCACAATATTGGTAACTTGTCCAGTATTTTGACACTGAATATGTCCTTGAATCCTTCAATTAGAGGTCCCATCCCTCGAGAAATCGGTGCTTTGAGCACTCTAAATCATCTTGATTTTAGTTCTTGTGGTCTCACTGGGCCAATTCCTCAAGAAATTGTGAACTTGAAGAATCTGACATATCTAGTGCTTATGAATAATTCCCTTTCTGGTCACATTCCTGAAGAAATAGGAAAGTTGAGTAATCTTGTGCAACTTGATTTGTCATTCAACTCACAGTTATCTGGTAGAATCCCTTCCTCAATTGGAAATTTGAGCAAGTTGCATGAACTTTATCTCAATGAGAACAATCTCTCTGGACCTATCCCTCATGAATTTGGGAAACTCTATTCTCTTGTTGATATTCGATTGAATAAAAATAAACTCTACGGAGCATTCCCTCCCTTCATAGGAAACTTCACACATCTTGAGAAGTTGATCTTGTCTGATAACAGACTTTTTGGTCCAATTCCTGCATCCATTGGTAACTTGGTCAATTTAACCTCCCTACACCTTCAAATTAACAGTCTCTCTGGACCTATTCCTTCCACCATAGGAAATTTGACAAAGCTCTACGCCTTATTATTGTATATTAACAATCTCAGTGGTCACATTCCAATAGAAATGAATAACGTGACAAGTTTGTTCAACTTACAACTAGGTAATAATCATTTCATTGGCCATTTGCCACAAGATATTTGTCTTGGAGGGAAATTATACAGGTTTGGTGCACCTGCCAACCATTTCTTTGGCCCAATTCCAACAAGTTTGAAGAATTGCTCCAGCCTTTCTAGACTTGTGCTTGATCATAACCAGTTAGTTGACAATATAACAGAAGCTTTTGGAGTATATCCAAATATGAACTACAACGATCTAAGTGGCAATAAATTGTATGGCCACCTTTCAGCCATGTGGGGAAAGTGTCGAAATCTCAGAACACTCAAGATTGACAACAACAATCTTTCTGGTGGTATACCACCAGAACTAGGGGAAGCAACCAATCTTGTTGAACTTAATCTGTCTTCAAATCATTTGACTGGGCAGATTCCGAAAGACCTACAAAACTTGACCTTACTGAGTGAACTCTCTTTGAGACACAATCGGCTTTCAGGCAAGGTTCCCACAGAATTAGTATCACTGAATCAACTTGAAATTTTAGAGCTAGCAGCAAATGATTTCAGTGGATCAATCACAAAAGAGCTTGCAGATTTAACAAGGTTAAGGATCCTGAATTTGAGGAACAACAAATTTGAGGACAGAATTCCCTCTGAGTTTGGTAAACTACAAGTTCTTGAAGAACTTGATCTTAGTGAGAATTTGTTGGGTGGAACAATACCAGCAACGCTGGGAGTGTTACAGAAGCTGCGAATATTGAACATCTCACATAATAATTTCTCTGGTACCATTTTTTCTAGCTTTAATGGGATGTTAGCATTGTCTTCTGTGGACATATCATACAACCAATTAGAGGGCTCCCTTCCAAATATTCCAGCCTTTCATAACATTACATTTCAATCATTGAGGAATAATAAAGGTTTGTGCGGTAATGTTACAGGCTTAAATCCTTGCTATGATCCTAGCAATAAAGTACATCGCTATAAGAGCAAAAAACTCAAATTATTGATATTATTCCTCACCTTGGGCACACTAATTGTAGTAGTAGTTGGAGTTTCTTGCATTGTTTGTCATTGTGTAAGAAAAACAGGACACCAAGATAAAGAAGCAGAGACTCAAGATCATTATGTTGTATGGAGTTCTCAAAGAGAGATAATGTATGAAAATATAATTGAAGCTACGAAGGACTTTGACGACAGATATCTCATCGGAAAGGGGGGCCAGGGAAGTGTTTATAAGGCTGAGTTGCCCACGGGCCATGTTGTTGCTGTGAAGAAGCTTCATTCAGTGCCAAGTGGTGAAATCTCCAATCTCAAAGCTTTTACAAGTGAGGTTCGAGCTTTGACAGAAATCAAACATCGTAACATTGTGAAGCTATATGGGTTTTGTTCAAATCCACAATTCTCTTTTTTGGTTTACGAGTTCTTGGAAGGTGGCAGCTTGGATAACATACTAAAGAATGAAAAACAAGCCACGGAGCTTGATTGGAATAAGAGGGTGAGCGTTGTTGAAGATGTGGCTAATGCTCTATTCTATATGCATCATGGCTGCTCATGCCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTCTAAGTTCAGATTATGAAGAAGCTCGAGTCACTGACTTTGGAACATCTAAGTTTTTGAAGCCTAACTCAAACAATATGACCTCATTTGCAGGCACCTTCGGGTATGCTGCTCCAGAGATTGCTTACATTATGGAAGCGAATGAGAAATGTGATGTTTATAGTTTTGGAGTGTTGACTTTGGAAATCATGATGGGAATGCATCCAGGAGAGTTTATTTCATCTTTGGTTGAGAATTCAGCTGCATACGATTTTCCATTGAAGGATGTGTTGGACCAGCGACTTCCTCAACCCAAGGAACCAATCGTTGAGAAGGTGATCTTGATTGCGAAGTTAGCATTTTCCTGCTTGAATGAAAATCCACGATCTCGTCCAACCATGGAACAAGTATCTAGGGAACTTGCAAGGTCACAATTTCATTTAGTGGATCAGTTTATTACCATTACAATTGGACAACTCATGAAATATTTAACTGCTTAA 3075 0.3906 MSESDSTKLLALWRILCIFFCVASFASAAAEDNEANALLKWKASLTKQSQATLSSWINGTNPCRNWKGISCDQSMSVVNTSLANLGLQGTLYNLSFASFPNLLYFDIGLNHFYGNIPHNIGNLSSILTLNMSLNPSIRGPIPREIGALSTLNHLDFSSCGLTGPIPQEIVNLKNLTYLVLMNNSLSGHIPEEIGKLSNLVQLDLSFNSQLSGRIPSSIGNLSKLHELYLNENNLSGPIPHEFGKLYSLVDIRLNKNKLYGAFPPFIGNFTHLEKLILSDNRLFGPIPASIGNLVNLTSLHLQINSLSGPIPSTIGNLTKLYALLLYINNLSGHIPIEMNNVTSLFNLQLGNNHFIGHLPQDICLGGKLYRFGAPANHFFGPIPTSLKNCSSLSRLVLDHNQLVDNITEAFGVYPNMNYNDLSGNKLYGHLSAMWGKCRNLRTLKIDNNNLSGGIPPELGEATNLVELNLSSNHLTGQIPKDLQNLTLLSELSLRHNRLSGKVPTELVSLNQLEILELAANDFSGSITKELADLTRLRILNLRNNKFEDRIPSEFGKLQVLEELDLSENLLGGTIPATLGVLQKLRILNISHNNFSGTIFSSFNGMLALSSVDISYNQLEGSLPNIPAFHNITFQSLRNNKGLCGNVTGLNPCYDPSNKVHRYKSKKLKLLILFLTLGTLIVVVVGVSCIVCHCVRKTGHQDKEAETQDHYVVWSSQREIMYENIIEATKDFDDRYLIGKGGQGSVYKAELPTGHVVAVKKLHSVPSGEISNLKAFTSEVRALTEIKHRNIVKLYGFCSNPQFSFLVYEFLEGGSLDNILKNEKQATELDWNKRVSVVEDVANALFYMHHGCSCPIVHRDISSKNVLLSSDYEEARVTDFGTSKFLKPNSNNMTSFAGTFGYAAPEIAYIMEANEKCDVYSFGVLTLEIMMGMHPGEFISSLVENSAAYDFPLKDVLDQRLPQPKEPIVEKVILIAKLAFSCLNENPRSRPTMEQVSRELARSQFHLVDQFITITIGQLMKYLTA 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2301 1024 ProSitePatterns Tyrosine protein kinases specific active-site signature. 855 867 IPR008266 GO:0004672|GO:0006468
Dere04g2301 1024 Gene3D Transferase(Phosphotransferase) domain 1 810 1011 - -
Dere04g2301 1024 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Dere04g2301 1024 FunFam Leucine-rich repeat receptor protein kinase MSP1 694 809 - -
Dere04g2301 1024 Pfam Protein kinase domain 735 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2301 1024 ProSiteProfiles Protein kinase domain profile. 731 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2301 1024 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515
Dere04g2301 1024 Pfam Leucine rich repeat 535 594 IPR001611 GO:0005515
Dere04g2301 1024 Gene3D Ribonuclease Inhibitor 206 367 IPR032675 -
Dere04g2301 1024 Gene3D Ribonuclease Inhibitor 368 654 IPR032675 -
Dere04g2301 1024 FunFam Nuclear pore complex protein NUP107 31 185 - -
Dere04g2301 1024 ProSiteProfiles Leucine-rich repeat profile. 463 486 IPR001611 GO:0005515
Dere04g2301 1024 FunFam MDIS1-interacting receptor like kinase 2 810 1004 - -
Dere04g2301 1024 Gene3D Phosphorylase Kinase; domain 1 692 809 - -
Dere04g2301 1024 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 341 656 - -
Dere04g2301 1024 SUPERFAMILY RNI-like 263 622 - -
Dere04g2301 1024 SMART LRR_typ_2 341 365 IPR003591 -
Dere04g2301 1024 SMART LRR_typ_2 172 196 IPR003591 -
Dere04g2301 1024 SMART LRR_typ_2 557 581 IPR003591 -
Dere04g2301 1024 SMART LRR_typ_2 293 317 IPR003591 -
Dere04g2301 1024 SMART LRR_typ_2 533 556 IPR003591 -
Dere04g2301 1024 SMART LRR_typ_2 221 245 IPR003591 -
Dere04g2301 1024 SMART LRR_typ_2 485 509 IPR003591 -
Dere04g2301 1024 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 247 1000 - -
Dere04g2301 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 189 289 - -
Dere04g2301 1024 SUPERFAMILY Protein kinase-like (PK-like) 706 999 IPR011009 -
Dere04g2301 1024 SUPERFAMILY L domain-like 52 359 - -
Dere04g2301 1024 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2301 Dere-ChrDere04 27552643 27555834 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2301 1 904 Receptor kinase-like Gene Family AT4G08850 43.191 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere04g2301 Pkinase 9.7e-45 CL0016