Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2298 ATGTCTGAGAGTGATTCCACTAAGCTTCTAGCATTATGGCGTATTCTCTGCATATTCTTCTGCGTTGCTTCGTTTGCGTCTGCTGCTGCTGAAGATAACGAAGCAAATGCACTGTTGAAGTGGAAAGCCAGCCTTACCAAACAAAGCCAAGCCACCTTGTCTTCTTGGATCAATGGCACTAATCCATGCAGAAACTGGAAAGGGATTTCATGTGACCAGTCTATGTCTGTGGTCAATATAAGTCATGCAAATCTTGGCCTTCAAGGTACACTTTACAATCTTAGCTTCGCTTCCTTCCCTAACCTCTTCTGTTTTGATGTAGGAGACAACCACTTCTATGGAAACATTCCCCTCAAAATTGGTAACTTGTCCACTATTTTGTCACTGAATATGTCCTTGAATCCTTCAAGTAGAGGTCCCATCCCTCGAGAAATCGGTGCTTTGAGCACTCTAAATCGTCTTGATTTTAGTTCCTGTGGTCTCACAGGACCAATTCCTCAAGAAATTGTGAACTTGAAGGATCTGACATATCCAGTGCTTTTGAATAATTCCCTTTCTGGTCACATTCCTGAAGAAATAGGAAAGTTGAGTAATCTTGTGCAACTTGATTTGTCATTCAACTCACAGTTATCTGGTAGAATTCCTTCTTCAATTGGAAATTTGAGCAAGTTGCATGAACTTTATCTCAGTGTGAACAATCTTTCTGGTCCTATCCCTCATGAATTTGGGAAACTCAATTCTCTTGTTGATATTCGATTGAATAATAATAAACTCTATGGACCATTCCCTCCCTTCATAGGAAACTTCACACATCTTGAGAAGTCGATCTTGTATGATAACAGACTTTTTGGTCCAATTCCTGCATCCATTGGTAACTTAGTCAATTTAACCTCCCTACACCTTCAAATTAACAGTCTCTCTGGACCTATTCCTTCCACCATAGGAAATTTGACAAAGCTCTACGCCTTGATATTGCGTATGAACAATCTCAGTGGTCACATTCCAATAGAAATGAATAACGTGACAAGTTTGTTTAACTTACAACTAGGTAATAATCATTTCATTGGCCATTTGCCACAAGATATGTCTTGGAGGGAAATTATACAGGTAGTGAACAATATAACAGAAGCTTTCGGAGTATATCCAAATCTGAACTACACCGATCTAAGTGGCAATAAATTGTATGGTCACCTTTCAGCCACGTGGGGAAAGTGTCGAAATCTCAGATCACTCAAGATTGACAACAACAATCTTTCGGGAGGTACACCGAAAGACCTTCAAAACTTGACCTTACTGAGTGAACTCTCTTTGAGACACAATCAGCTTTCAGGCAAGGTTCCCACAGAATTAGGATCACTGAATCAACTTGAAATTTTAGAGCTAGCAGCAAATGATTTCAGTGGATCAATCACAAAAGAGCTTGCAGATTTAACAAGGTTAAGGATCCTGAATTTGAGCAACAACAAATTTGAGGACAGAATTCCCTCTGAGTTTCGTAAACTGCAAGTTCTTGAAGAACTTGATCTTAGTGAGAATTTGTTGGGTGGAACAATACCAGCAACGCTGGGAGTGTTACAGAAGCTGCGAATATTGAACATCTCACATAATGATTTCTCTGGTACCATTTTTTCTAGCTTTAATGGGATGTTAGCCTTGTCTTCTGTGGACATATCACACAACCAATTAGAGGGCTCCCTTCCAAATATTCCAGCCTTTCCTAATGTCACATGTCAATCATTGAGGAACAATAAAGGTGGCAGCTTGGATAACATAGTAAAGAATGAAAAACAAGCCACGGAGCTTGATTGGAATAAGAGGGTGAACGTTGTTAAAGATGTGGCTAATGCTCTATTCTATATGCATCATGGCTGCTCACGCCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTCTAAGTTCAGATTATGAAGAAGCTCGAGTCAGTGACTTTGGAACATCAATGTTTTTGAAGCCCAACTCAAACAAGGTGACCTCATTTGCAGGCACCTTCGGGTATGCTGCTCCAGAGATTGCTTACTTTATGGAAGCGAACGAGAAATGTGATGTTTATAGTTTTGGAGTGTTGACTTTGGAAATCATGATGGGAATGCATCCAGGAGAGTTTATTTCATCTTTGGTAGAGCATTCAACTGCATATGATTTACCATTGAAGGATGTGTTGGACCAGCGACTTCCTGAACCCACAGAACTAACAGTTGAGAAGGTGATCTTGATTGCGAAGTTAGCATTTTCTTGCTTGAATGAAAATTCACGATCTCGTCCAACCATGGAACAAGTATCTATGGAACTTGCAAGGCCAAAATTTCATTTCGTGGATCAATCTGTTGCCATTACAATTGGACAACTCATGAAAGATTTAACTCCTAATTGTGTGTCTGCATATTTTTAA 2415 0.3971 MSESDSTKLLALWRILCIFFCVASFASAAAEDNEANALLKWKASLTKQSQATLSSWINGTNPCRNWKGISCDQSMSVVNISHANLGLQGTLYNLSFASFPNLFCFDVGDNHFYGNIPLKIGNLSTILSLNMSLNPSSRGPIPREIGALSTLNRLDFSSCGLTGPIPQEIVNLKDLTYPVLLNNSLSGHIPEEIGKLSNLVQLDLSFNSQLSGRIPSSIGNLSKLHELYLSVNNLSGPIPHEFGKLNSLVDIRLNNNKLYGPFPPFIGNFTHLEKSILYDNRLFGPIPASIGNLVNLTSLHLQINSLSGPIPSTIGNLTKLYALILRMNNLSGHIPIEMNNVTSLFNLQLGNNHFIGHLPQDMSWREIIQVVNNITEAFGVYPNLNYTDLSGNKLYGHLSATWGKCRNLRSLKIDNNNLSGGTPKDLQNLTLLSELSLRHNQLSGKVPTELGSLNQLEILELAANDFSGSITKELADLTRLRILNLSNNKFEDRIPSEFRKLQVLEELDLSENLLGGTIPATLGVLQKLRILNISHNDFSGTIFSSFNGMLALSSVDISHNQLEGSLPNIPAFPNVTCQSLRNNKGGSLDNIVKNEKQATELDWNKRVNVVKDVANALFYMHHGCSRPIVHRDISSKNVLLSSDYEEARVSDFGTSMFLKPNSNKVTSFAGTFGYAAPEIAYFMEANEKCDVYSFGVLTLEIMMGMHPGEFISSLVEHSTAYDLPLKDVLDQRLPEPTELTVEKVILIAKLAFSCLNENSRSRPTMEQVSMELARPKFHFVDQSVAITIGQLMKDLTPNCVSAYF 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2298 804 SUPERFAMILY RNI-like 262 586 - -
Dere04g2298 804 ProSitePatterns Tyrosine protein kinases specific active-site signature. 628 640 IPR008266 GO:0004672|GO:0006468
Dere04g2298 804 ProSiteProfiles Protein kinase domain profile. 456 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2298 804 SMART LRR_typ_2 221 245 IPR003591 -
Dere04g2298 804 SMART LRR_typ_2 477 500 IPR003591 -
Dere04g2298 804 SMART LRR_typ_2 501 525 IPR003591 -
Dere04g2298 804 SMART LRR_typ_2 293 317 IPR003591 -
Dere04g2298 804 SMART LRR_typ_2 429 453 IPR003591 -
Dere04g2298 804 SMART LRR_typ_2 196 217 IPR003591 -
Dere04g2298 804 FunFam Piriformospora indica-insensitive protein 2 471 568 - -
Dere04g2298 804 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Dere04g2298 804 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Dere04g2298 804 Pfam Leucine rich repeat 479 538 IPR001611 GO:0005515
Dere04g2298 804 Gene3D Ribonuclease Inhibitor 206 370 IPR032675 -
Dere04g2298 804 Pfam Protein kinase domain 584 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2298 804 Gene3D Ribonuclease Inhibitor 471 589 IPR032675 -
Dere04g2298 804 FunFam Leucine-rich repeat receptor protein kinase EMS1 191 287 - -
Dere04g2298 804 Gene3D Transferase(Phosphotransferase) domain 1 590 786 - -
Dere04g2298 804 PANTHER LEUCINE RICH REPEAT KINASE 2 266 585 - -
Dere04g2298 804 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Dere04g2298 804 SUPERFAMILY Protein kinase-like (PK-like) 584 770 IPR011009 -
Dere04g2298 804 FunFam MDIS1-interacting receptor like kinase 2 583 777 - -
Dere04g2298 804 FunFam Leucine-rich repeat receptor protein kinase EMS1 288 376 - -
Dere04g2298 804 SUPERFAMILY L domain-like 53 359 - -
Dere04g2298 804 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 377 470 - -
Dere04g2298 804 FunFam Nuclear pore complex protein NUP107 31 190 - -
Dere04g2298 804 Gene3D Ribonuclease Inhibitor 371 470 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2298 Dere-ChrDere04 27501969 27505097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2298 586 677 Receptor kinase-like Gene Family AT4G08850 58.696 5.68e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere04g2298 Pkinase 8.6e-24 CL0016