Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2287 ATGGTTGATTCACTTCAGCCTCTAGCATTATGGCGTGTTCTCTGCATATTCTTCTGTGTTGCTTTGTTCGCATCTGCTGCTCCTGAGGATAGCGAAGCAAATGCTCTGTTGAACTGGAAAGCCAATCTTAACAAAGAAAGCCAAGCTACCTTGTCTTCCTGGATTAATGGCACTAATCCTTGCAGACATTGGAAAGGGATTTCGTGTGATCGATCCATGTCTGTGTTCAATATAAGCCTTTCAAATCTTAGCCTACAAGAAATTGGGGCATTAAGCACTCTGAATCGTCTTGATTTTAGTGCATGTAATCTCAGAGGGTCAATTCCCCAAGAAATTGGGAACTTGAGGAATCTGACGTATCTAATGCTTGCAGCGAATCCCCTTTCTGGTTCCATTCCCGAAGAGATTGGAATGTTGAACAATCTTTTGTACATTGATTTGGCAGAAAACCAATTGTTATCTGGTTCAATCCCATCTTCAATTGGAAACTTGAGCAAGTTAGAACAACTTTATATCTATGAAACCATCCTCTCTGGTCCTATTCCTAATGAATTTGGGAAACTCTATTCTCTTGTTAATATTCAATTGTTCAGCAATAAACTCTATGGGCCAATCCCTCCATCCATAGGAAACTGTACAAATCTCCAGCAACTGAGCTTAAGAAATAATAGCCTTTTTGGTCCAATTCCTGCTTCCATTGGCAACTTGATCAAGTTGAAGCACCTCCATCTTCAAATGAACAACCTTTCTGGACCCATTCCTTCCACCATAGGAAACTTGACAAAAGTCTCCACCATATTATTGATGACAAACAATCTCAGTGGTCACATTCCCCAAGAAATGAATAACTTCACTAGTTTGCATAACTTGCAACTAGGTCATAATAATTTCATTGGCCATTTGCCACAGCAGATTTGTCGTGGTGGGACATTAGGCAGGTTTGCTGCTTCTGCAAACCATTTTACTGGTCCAATTCCAACAAGTTTGAAGAATTGCTCTAGCATTTCTAGAATTGTTCTTGATCATAACCAATTAGTTGATAATATTACAAATGCTTTTGGAGTATATCCGAATTTGGACTACATCAATCTAAGTGGCAATAAATTGTATGGCCACCTTTCATCCACTTGGGGGAAGTGTCATAGTCTCACATCTCTCAAAATTTCCGACAATAATCTTTCTGGTGGTATACCACCAGAACTAGCGGAGGCAACCAATCTTGCTGAACTTGGTCTCTCTTCAAATCAATTAACAGGACAAATTCCAAAGGACTTGGGGAAATTGACCGCATTGCTTGAACTCTCTTTGAGCAACAATGAACTTTTAGGCAAGGTTCCAACAAACATAGGATCACTGAATCATATTGAAAGATTGGAGCTAGCAGCCAATAATTTCAGTGGCTCAATCCCAAAGCTTGGGGGACTAAAATTGTTAAAGTTTCTGAATTTGAGCAAAAACAAATTTGAGGACAACATTCCCTCTGATTTTGGCAAACTTCAAGCTCTTGAAGAACTTGATCTTAGTGAAAATTTGTTGAGTGGAACATTACCTAAGCTAGGAGTGTTACCGATGTTGCAAAAATTAAACCTCTCACATAATAATTTCTCTGGCACCATTTCGTCCAGTTTTAGTGGGTCGTCATCCTTACTTTCTGTGGACATATCATACAACCAATTAGAGGGCGCCCTTCCAAACATTCCAGCCTTTCATAACATTACAATTGAAGCATTGCGGAACAATAAAGATTTGTGCGGTAATGTCACTGGTTTACATCATTGTAGTAATTTTGAAAATGGTGCAAATGGTTTTAAGAGCAAAAAAGTCAAGTTCCTGTTAATATTCCTCCCATTGGGCATACTAATGCTAATAGTGGTTGGAGCTTCTTGCATTTTTTGGCAAAATGCAAGGAAAACAAAACAGCAAGATAAAGAAGCAAATCCCCAAGATCTTTATGTTGTATGGAGTTCTGATAGAGAAATAATGTATGAAAATATAATTGAAGCTACAAAGGACTTTGACGACATATATCTCATTGGAAAGGGGGGTCAGGGAAGTGTTTATAAGGCCGAGTTGCCCACGGGTCACACTTTTGCTGTGAAGAAACTTCATTCAATGCCAAGTGGTGAAATCTCCAATCTCAAAGCTTTTACAAGTGAGGTTCGAGCTTTAACAGAAGTCAAGCATCGTAACATTGTGAAGTTATATGGGTTTTGTTCAAATCCGCACTTCTCATTTTTGGTTTATGAGTTCTTGGAAGGTGGCAGCTTGGATAACATACTAAAGCATGTGGAAAAAGCCACTAAGCTTAATTGGAATAGGAGGGTGAACATCGTTAAAGATGTGGCTAATGCTTTATCCTATATGCATCATGGTTGCTCGTTCCCTATAGTTCATCGGGACATATCAAGCAAGAATGTTCTTCTAACTTCTGATTATGAAGAAGCTCGCATCACTGACTTTGGAACAGCTAAGTTTTTGAAGCCTGACTCAAACAATATGACCTTATTTGTAGGCACCTTTGGGTATGCTGCGCCAGAGATTGCTTACATTATGGAAGCGAACGAGAAATGCGATGTTTATAGTTTTGGAGTATTGACTTTGGAAATCATAATGGGAATGCATCCAGGAGAGTTTATTTCATCTTTGATGGAGAAGTCAACTTCCTATGATTTGCCATTAAAGGATGTGTTAGACCAACGTCTTCCTCAACCCGCGAAACCAATTGTTGAAAAGGTCACCCTGATTGCAAAATTGGCATTTTCTTGCTTGAATGGAAGCCCACAATCTCGTCCAACAATGGAAAAATTATCTATGGAGCTTGCAAAGGGAGAATCTCATTTAGTGGATCAGTTTAACACCCTCACGATTGGACAACTCATGGAGGATGGAACTCCTTAA 2898 0.3923 MVDSLQPLALWRVLCIFFCVALFASAAPEDSEANALLNWKANLNKESQATLSSWINGTNPCRHWKGISCDRSMSVFNISLSNLSLQEIGALSTLNRLDFSACNLRGSIPQEIGNLRNLTYLMLAANPLSGSIPEEIGMLNNLLYIDLAENQLLSGSIPSSIGNLSKLEQLYIYETILSGPIPNEFGKLYSLVNIQLFSNKLYGPIPPSIGNCTNLQQLSLRNNSLFGPIPASIGNLIKLKHLHLQMNNLSGPIPSTIGNLTKVSTILLMTNNLSGHIPQEMNNFTSLHNLQLGHNNFIGHLPQQICRGGTLGRFAASANHFTGPIPTSLKNCSSISRIVLDHNQLVDNITNAFGVYPNLDYINLSGNKLYGHLSSTWGKCHSLTSLKISDNNLSGGIPPELAEATNLAELGLSSNQLTGQIPKDLGKLTALLELSLSNNELLGKVPTNIGSLNHIERLELAANNFSGSIPKLGGLKLLKFLNLSKNKFEDNIPSDFGKLQALEELDLSENLLSGTLPKLGVLPMLQKLNLSHNNFSGTISSSFSGSSSLLSVDISYNQLEGALPNIPAFHNITIEALRNNKDLCGNVTGLHHCSNFENGANGFKSKKVKFLLIFLPLGILMLIVVGASCIFWQNARKTKQQDKEANPQDLYVVWSSDREIMYENIIEATKDFDDIYLIGKGGQGSVYKAELPTGHTFAVKKLHSMPSGEISNLKAFTSEVRALTEVKHRNIVKLYGFCSNPHFSFLVYEFLEGGSLDNILKHVEKATKLNWNRRVNIVKDVANALSYMHHGCSFPIVHRDISSKNVLLTSDYEEARITDFGTAKFLKPDSNNMTLFVGTFGYAAPEIAYIMEANEKCDVYSFGVLTLEIIMGMHPGEFISSLMEKSTSYDLPLKDVLDQRLPQPAKPIVEKVTLIAKLAFSCLNGSPQSRPTMEKLSMELAKGESHLVDQFNTLTIGQLMEDGTP 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2287 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 275 - -
Dere04g2287 965 SUPERFAMILY Protein kinase-like (PK-like) 647 937 IPR011009 -
Dere04g2287 965 SUPERFAMILY RNI-like 247 576 - -
Dere04g2287 965 ProSiteProfiles Protein kinase domain profile. 672 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2287 965 FunFam Nuclear pore complex protein NUP107 29 182 - -
Dere04g2287 965 SMART LRR_typ_2 284 308 IPR003591 -
Dere04g2287 965 SMART LRR_typ_2 475 498 IPR003591 -
Dere04g2287 965 SMART LRR_typ_2 236 260 IPR003591 -
Dere04g2287 965 SMART LRR_typ_2 115 139 IPR003591 -
Dere04g2287 965 SMART LRR_typ_2 522 545 IPR003591 -
Dere04g2287 965 SMART LRR_typ_2 499 520 IPR003591 -
Dere04g2287 965 SMART LRR_typ_2 428 452 IPR003591 -
Dere04g2287 965 Gene3D Ribonuclease Inhibitor 152 311 IPR032675 -
Dere04g2287 965 Gene3D Ribonuclease Inhibitor 87 151 IPR032675 -
Dere04g2287 965 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Dere04g2287 965 Pfam Leucine Rich Repeat 525 544 IPR001611 GO:0005515
Dere04g2287 965 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515
Dere04g2287 965 Gene3D Transferase(Phosphotransferase) domain 1 751 955 - -
Dere04g2287 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 284 597 - -
Dere04g2287 965 ProSitePatterns Tyrosine protein kinases specific active-site signature. 796 808 IPR008266 GO:0004672|GO:0006468
Dere04g2287 965 PANTHER LEUCINE RICH REPEAT KINASE 2 185 942 - -
Dere04g2287 965 Gene3D Ribonuclease Inhibitor 25 86 IPR032675 -
Dere04g2287 965 Gene3D Ribonuclease Inhibitor 312 600 IPR032675 -
Dere04g2287 965 Pfam Protein kinase domain 675 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2287 965 Gene3D Phosphorylase Kinase; domain 1 632 750 - -
Dere04g2287 965 FunFam Leucine-rich repeat receptor protein kinase MSP1 635 750 - -
Dere04g2287 965 SUPERFAMILY L domain-like 42 345 - -
Dere04g2287 965 FunFam MDIS1-interacting receptor like kinase 2 751 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2287 Dere-ChrDere04 27140325 27143508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2287 13 845 Receptor kinase-like Gene Family AT4G08850 40.821 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere04g2287 Pkinase 1.9e-44 CL0016