Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2284 ATGAGGCTTTCTTCGTCGGGATTTGGTCAACTGGCTCGAGAAGATGATAAAAAAAGTTTGAATTCTGAACTATGGCATGCATGCGCTGGCCCTCTGGTGTCTCTACCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCACAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAAGGAAGTAGATGCACATATTCCCAATTACCCTAACTTACCACCACAGCTTGTTTGTCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTCTGAGTCTGCAAGAGCAAAAGGATGTCTATCTACTTCCTGTAGAATTGGGTACTCCCAGCAAACAACCAGCCAACTACTTCTGTAAAACATTAACAGCTAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGAAGAGCAGCTGAAAAAGTGTTTCCTCCACTTGATTACTCGCAACAGCCTCCTGCACAAGAACTAATAGCTAGGGACCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGTGATAGCATGTGCTGTGGCCTCACAAGTGGAGGAAAGGGGATGGTGCAAGATATCTCACAACCTGGATCAAAATGGAAGGCAGTTGATGAAAACTGTGAAAGCTAGTGATTCATATATGGATGGAGTTTTGGTGTCCTGTATTGAACTGAATGAAAAAAATCAATTACTCTTGGGTATTCGGCGAGCACATCGTCCACAGACTGTCATGCCATCTTCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCTGCTCATGCAGCGGCTACAAATAGCCGATTTACTATATTCTATAACCCTAGGGCAAGCCCATCAGAATTTGTCATTCCCTTGGCCAAGTATGTTAAAGCTGTGTATCATACACAAGTTTCTGTAGGCATGCGATTTAGGGTGCTCTTTGAGACTGAGGAATCAAGTGTTCGTCGATACATGGGTACCATCACAGGCATTAGTGATTTAGATGCTGTTCGCTGGCCAAATTCTCACTGGCATTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAACCAAGAGTTTCCCTGTGGGAGATTGAACCGTTGACAACATTCCCAATGTATCCATCTCCATTTCCTTTGAGGCTGAAGCGTCCTTGGCCATCACAACTACTTTCTTTCAATGGTCTCAAGGATAGTGACATGGGCCTTAGTCCACTCATGTTACTCCACGGTGGTCTTGGGGATCAGGGAATGCATTCTTTGAACTTCCAGGGCCTTGGGGCTACACCATGGATGCAGCCGAGACTTGATGCTTCTGTACCAGGTCTACAACCAGAGATGTACCAAGCAAAGGCTGCTGCTGCTGCTCTCCAGGAAATGAGGACAATGGGTCCTTCTAAATCTTCTTCCCAATCAATGCTGCAGTTTCAGCAGTACTCAAATGTTCCTAGTGCTCCTACTTCTGCAATCCAGAGGCAAGTGCTACCGTTGTACCAGCCTCAAAGTACTCTTCTAAACAATTTTCAGGAGAACCAGGTGCCTGTTCAGTCTCGTCTTCTGCAACAACAGTTGCAGCATTATCACCCATATAATGGACAGCTGCTACAGCAACTGAACAATTTGCCTGTTCAGCAGCAGATCCCAAATATCATCTCTCCTTTGTCTAATTTTACATCAGCTGCACAGTCTCAATCTCCATCCTTGCAGGCCCTAGCCTCACATTGCCGGCAACCAAGTTTCCCTGAACCTGTCAAGAACCATATTTCTAGCTCTGATGTGACCCCTACTTACTGGATATTAGGATCACTCTCCCACAATGACACATCCCAGTTACATAACTTGAATGGATCCAACTCAATGTTCTCTTCTGCTGCCCTAATACCCAAGCAAGCAACTGCTAACTTTCAGCTTGCATCTGCTGTTGATCAGTGTGTATTGCCCCAAGTGGAAAACTTGGGAACAACACAATCAGATGTGTCTGAGCTTGCTGCTCTGCCTCCATTTCCTGGAAGAGAATATTCTGCGTATCAAGGTGCTGCTGATCCTCAGAGCAATCTTTTGTTTGGGGTCAACATTGATCCCTCTTCTCTTATTCTACAGAATGGCATGCCAAACCTAAGAAATGTTGGTAATGAAAATAATGCGTTGTCAATGCCATTTCCTGCTTCACACTTTGCTGGTGCTACAAGCACTGATTTTCCACCAAGTTCAGACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCGTCTGAATATGGAGACCCAGCAATTAAATCAACTGAAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGGACATTTCTAAGTACGGCAGCTATGATGAATTGCGCAGTGAGCTCGCACGTTTGTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTCGTTAACAATGTGTGGTACATTAAGATATTGTCTCCAATTGAAGTGCAACAAATGGGCAAAAAACGTCTTAGTCCTGCTAATTCTGTGCCGAGTCACAAGCTTTCTTCTACTAGCAACAATTTTGATAACCATGGGAGCCACCAAGAGTTGAGAAGTTCGTGCAATGGCATTCCGTCCATGGGTTCTCTTGGCTACTAA 2736 0.4525 MRLSSSGFGQLAREDDKKSLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLSLQEQKDVYLLPVELGTPSKQPANYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRVIACAVASQVEERGWCKISHNLDQNGRQLMKTVKASDSYMDGVLVSCIELNEKNQLLLGIRRAHRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTQVSVGMRFRVLFETEESSVRRYMGTITGISDLDAVRWPNSHWHSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSQLLSFNGLKDSDMGLSPLMLLHGGLGDQGMHSLNFQGLGATPWMQPRLDASVPGLQPEMYQAKAAAAALQEMRTMGPSKSSSQSMLQFQQYSNVPSAPTSAIQRQVLPLYQPQSTLLNNFQENQVPVQSRLLQQQLQHYHPYNGQLLQQLNNLPVQQQIPNIISPLSNFTSAAQSQSPSLQALASHCRQPSFPEPVKNHISSSDVTPTYWILGSLSHNDTSQLHNLNGSNSMFSSAALIPKQATANFQLASAVDQCVLPQVENLGTTQSDVSELAALPPFPGREYSAYQGAADPQSNLLFGVNIDPSSLILQNGMPNLRNVGNENNALSMPFPASHFAGATSTDFPPSSDMTTSSCVDESGFLQSSEYGDPAIKSTETFVKVHKSGSFGRSLDISKYGSYDELRSELARLFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPIEVQQMGKKRLSPANSVPSHKLSSTSNNFDNHGSHQELRSSCNGIPSMGSLGY 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2284 911 MobiDBLite consensus disorder prediction 867 911 - -
Dere04g2284 911 SUPERFAMILY CAD & PB1 domains 774 850 - -
Dere04g2284 911 CDD B3_DNA 127 185 IPR003340 GO:0003677
Dere04g2284 911 Pfam AUX/IAA family 773 860 IPR033389 -
Dere04g2284 911 Gene3D - 126 248 IPR015300 -
Dere04g2284 911 FunFam Auxin response factor 311 383 - -
Dere04g2284 911 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere04g2284 911 MobiDBLite consensus disorder prediction 867 905 - -
Dere04g2284 911 FunFam Auxin response factor 771 865 - -
Dere04g2284 911 SUPERFAMILY DNA-binding pseudobarrel domain 113 276 IPR015300 -
Dere04g2284 911 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere04g2284 911 ProSiteProfiles PB1 domain profile. 776 874 IPR000270 GO:0005515
Dere04g2284 911 Gene3D - 771 865 - -
Dere04g2284 911 Gene3D - 311 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2284 Dere-ChrDere04 27043925 27053193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2284 1 505 B3 DNA Binding Superfamily AT1G30330 73.581 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere04g2284 AUX_IAA 1.8e-06 CL0072