Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2276 ATGAATAGTTTTCCTGGTTGGAATTTTGGTAGTGATGCTTGTGTCACCAATCAAAAGAAGCCCATCCGGCCGGACCAGGAACTTATGGAGCTCCTATGGCAAAATGGACAGGTAGTTTTGCACAGCCAAACACAAAGGAAACCAGTTGTGAATTCTATGGATTCAAGACAGTTTCGGAAAAATGATCAATCAACAATCAGGGCTAATGAGTCAAATGGGAATTCAAGTCATTTGATACAAGAAGACGATGCAGTCTCATGGATCCAATACCCACTTGAGGATCCATTGGACCAAGAATTCTGTTCAAGCTTTTTCTCGGAACTGCCATCATGTGGAGTGGAGTCTGATAAGCCAATAAAGCAGTCTGAAGAGGGAAAGTATATCAAATTTGGCCCCTACAGTGCCCCCCATGTGACTGCAAGTTCACAAACACCAAATATAAAACCCTCCCGTGCTCAGGAGTTCTCAGGAAATCCTATACCTGCTCCAAGATTTCACTCTCCTGATTCACCCCAGAAAAATATCAACTTTGGTGGATCACCAAAAGTCATCAATTTTTCTCAGTTTTCAGCAGCCCCAGAAGTAGCCTCAACATCTTCCAGTGCACCATTTGAAGGGAAAGGTACCGGTAATCTATTGCAAAGCAAGGCTAGAGAGTGCTCAGGTATGACAGTTGGTTCAAGTCGCTGTGGCAGCAATCAAGTCCCTCTAGACCCAGATGTAAGCAGGGTATCAAGCAATGGTGTTTGGACTACTACTTTATATGCTGAGCCTGAACCCTTAGGGGATGATGTCCAGAAATCAATTCCTCAGAGTGAAAAAGGGAAATCCGAGGCGCTTGAACCAACTTTGACTTCATCATCTGATGGCTCAGGTAGTCTTGCAAAAACTTGCTCCTGGTCCACAAGAAACCACAGTCAAAAGAGGAAAAAGATAGATGCAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACTCAAATCAGCTGTTGAAAACAAGGTAACTCAGGGGAAAGGGTCTTCCCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCGGAAAGGAGACGAAGAGATAGGATCAACGAGAAGATGAGGGCATTGCAACAACTGATACCTCACTGTAACAAGACGGACAAAGCATCAATGTTAGATGAGGCAATTGAATACTTGAAATCACTTCAGCTACAACTTCAGGTAATGTGGATGGGAGCTGGCATGGCACCAGTACTGTTTCCAGGAATTCAGCACTATATGTCCCAAATGGGGATGGGAATGGCTGCGCCTTCTTTTCAGCCTATTCACAACCCAATACGATTACCTAGATCATCGGTTGATCAGCCCATATCTGTGGCTCAGACACCAAACCAGGCTTTAATGTGTCAAAATCCTCTTTTGGGTCCCTTTACTTATCAAAGTCAGATGCAAAATCAAGCTCTTTCAGAGCAATATGCACGTTACATGGGATATCATCTTATGCAAAATACCTCTCAGCCAATGAATGTATTTGGATATGGTTCCCAAGTACAACATAATCAAACAACAATTCCACCCAGCAGTAGCAGTGGACCACTGAATGGTGCTGTAAATAATGATGCTGCAAGTGGCAAGATGGGTTAA 1620 0.4377 MNSFPGWNFGSDACVTNQKKPIRPDQELMELLWQNGQVVLHSQTQRKPVVNSMDSRQFRKNDQSTIRANESNGNSSHLIQEDDAVSWIQYPLEDPLDQEFCSSFFSELPSCGVESDKPIKQSEEGKYIKFGPYSAPHVTASSQTPNIKPSRAQEFSGNPIPAPRFHSPDSPQKNINFGGSPKVINFSQFSAAPEVASTSSSAPFEGKGTGNLLQSKARECSGMTVGSSRCGSNQVPLDPDVSRVSSNGVWTTTLYAEPEPLGDDVQKSIPQSEKGKSEALEPTLTSSSDGSGSLAKTCSWSTRNHSQKRKKIDAEELEEQSEATELKSAVENKVTQGKGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHCNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPVLFPGIQHYMSQMGMGMAAPSFQPIHNPIRLPRSSVDQPISVAQTPNQALMCQNPLLGPFTYQSQMQNQALSEQYARYMGYHLMQNTSQPMNVFGYGSQVQHNQTTIPPSSSSGPLNGAVNNDAASGKMG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2276 539 Coils Coil 539 539 - -
Dere04g2276 539 MobiDBLite consensus disorder prediction 222 253 - -
Dere04g2276 539 FunFam Basic helix-loop-helix transcription factor 340 403 - -
Dere04g2276 539 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983
Dere04g2276 539 MobiDBLite consensus disorder prediction 138 157 - -
Dere04g2276 539 Gene3D - 340 401 IPR036638 GO:0046983
Dere04g2276 539 MobiDBLite consensus disorder prediction 51 76 - -
Dere04g2276 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 406 IPR036638 GO:0046983
Dere04g2276 539 MobiDBLite consensus disorder prediction 278 302 - -
Dere04g2276 539 PANTHER TRANSCRIPTION FACTOR PIF3 16 490 IPR044273 GO:0003700|GO:0006355
Dere04g2276 539 Coils Coil 307 327 - -
Dere04g2276 539 CDD bHLH_AtPIF_like 345 408 IPR047265 -
Dere04g2276 539 MobiDBLite consensus disorder prediction 306 326 - -
Dere04g2276 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Dere04g2276 539 MobiDBLite consensus disorder prediction 510 529 - -
Dere04g2276 539 MobiDBLite consensus disorder prediction 222 350 - -
Dere04g2276 539 MobiDBLite consensus disorder prediction 327 342 - -
Dere04g2276 539 MobiDBLite consensus disorder prediction 138 153 - -
Dere04g2276 539 SMART finulus 351 400 IPR011598 GO:0046983
Dere04g2276 539 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2276 Dere-ChrDere04 26859757 26862857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2276 4 97 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.175 5.59e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g2276 HLH 3.3e-14 No_clan