Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2260 ATGGATAATGTAAACGAAGCATCATCTTCCTTGAGTTTTGCATCATCTTACTTATCAAATGGGTCTAGTAATCCCAACATATCTTCCATCACCAGCGGTGAGCATGTTACAAATCTTGAAAATTTGAGTCTGAGTAAGCTCAGTGGAAGCCTTGAGAAGCTATTAATAAACACTGAATATGACTATAGTGACGTGGAGATTGTTGTTGAGGATATTGCTGTAAGTGTTCATAGGTGTATATTGGCTTCACGTAGTCAGTTCTTTCATGAACTTTTTAAGAAAGGAAATGATGGTTCAGTGAAGGAAGGTAAGCCAAGGTATCTCATGTCTGAACTGTTGCCTTATGGGTTTGTTGGATATGAAGCCTTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTAAAAGCGTCCCCACCAGAAGTATCAACGTGTGTTGATGATGCATGTGCGCATGATGCATGCCACCCGGCTATTAATTATGCTTTAGAACTGATGTATGCTTCTGCAACGTTTCAGATGAAAGAGCTTGTTTTACTTGTTCAGCGGCGTCTCCTCAATTTTGTTGAGAAGGCTCTTGTAGAAGATGTGATTCCTATTCTTATGGCTGCCTTCCACTGCCAACTAAACCAGCTGCTCTCGCACTGCATCCAAAGAATAGCACGATCTGACCTTGACAATACAACTTTGGATAAAGAGCTCCCACATGAAGTTGTTAGTGAAATTAAATTACTCCAAGTCAAATCTCTGCCAGAATCCACGCCTGATGCAATGGAAGTGGAACCTTCAAATGAAAAGAGTATTAGGAGAATCCTTAAAGCATTGGACTCTGATGATGTTGAGCTGATGAAGCTTCTTTTGAATGAGTCTAGTGTCACTCTAGATGATGCTTATGCCCTACACTATGCTTGTGCCTATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTAATCTTGGGTTGGCTGACATTAACCGTAGGAATCCCCGAGGGTATACGGTTCTTCATGTTGCTGCAAGGCGTAAAGATCCAACAATTTTAGTAGCACTGTTGAATAAAGGGGCCTGTGCATCAAGTACCACATTAGATGGACAAACTGCTGTTGCAATATGTCGGAGGTTGACAAGACCCAAGGATTATAATGAGATAGCAGTACAGGGGAAGGAATCTAACAAAGACAAGCTCTGTGTTGATGTACTGGAGAGAGAGATGAGAAGAACTTCGATGTCTGTGAATGCATCAGTTTCGTCACAGTTAACTGCTGACGATTTGCACATGAGACTTGATTACCTGGAAAATAGAGTTGCTTTCGCTAGGCTGTTGTTTCCTGCTGAGGCTAAGGTGGCCATGGATAATGCAAAGGCAGAGTCAACACTACTGTATGCAAGCCAATCAGCATTGAAGGGCTCAAGTGGCAACCTAAGAGTTGATTTAAATGAAACACCCTCTGCGCGAACCAGAAAACTCCAGTTAAGATTGCATGCCCTTCTGAAAACAGTTGAGAATGGCCGGCGCTTCTTTCCGCATTGCTCTGAGGTTCTTGATAAATTTCTAGAAGATGATATGCCTGATGTTTTCTTCTTAGAGAAGGGCACTGAAGAAGAACAGAGAATCAAGAAAACACGCTTCATGGAACTTAAAGAGGACGTGCAGAAGGCATTTCACAAGGATATGGCTGAAAATAATGGTTCTGGTTTCTCATCCTCAGTTAGTTCTTCATCATCGTCATCTCCTAGGAAAGGTCTAGGCCAGAGAGTGAGGAAAAAGTGA 1767 0.4171 MDNVNEASSSLSFASSYLSNGSSNPNISSITSGEHVTNLENLSLSKLSGSLEKLLINTEYDYSDVEIVVEDIAVSVHRCILASRSQFFHELFKKGNDGSVKEGKPRYLMSELLPYGFVGYEAFLVFLHYLYTGKLKASPPEVSTCVDDACAHDACHPAINYALELMYASATFQMKELVLLVQRRLLNFVEKALVEDVIPILMAAFHCQLNQLLSHCIQRIARSDLDNTTLDKELPHEVVSEIKLLQVKSLPESTPDAMEVEPSNEKSIRRILKALDSDDVELMKLLLNESSVTLDDAYALHYACAYCDSKVVQEVLNLGLADINRRNPRGYTVLHVAARRKDPTILVALLNKGACASSTTLDGQTAVAICRRLTRPKDYNEIAVQGKESNKDKLCVDVLEREMRRTSMSVNASVSSQLTADDLHMRLDYLENRVAFARLLFPAEAKVAMDNAKAESTLLYASQSALKGSSGNLRVDLNETPSARTRKLQLRLHALLKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGTEEEQRIKKTRFMELKEDVQKAFHKDMAENNGSGFSSSVSSSSSSSPRKGLGQRVRKK 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2260 588 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Dere04g2260 588 PANTHER REGULATORY PROTEIN NPR3 14 577 IPR044292 GO:0009862|GO:2000022|GO:2000031
Dere04g2260 588 FunFam regulatory protein NPR3-like 263 403 - -
Dere04g2260 588 SUPERFAMILY Ankyrin repeat 264 373 IPR036770 -
Dere04g2260 588 FunFam Regulatory protein NPR3 37 221 - -
Dere04g2260 588 Gene3D Potassium Channel Kv1.1; Chain A 28 222 IPR011333 -
Dere04g2260 588 MobiDBLite consensus disorder prediction 553 588 - -
Dere04g2260 588 SUPERFAMILY POZ domain 46 187 IPR011333 -
Dere04g2260 588 SMART ANK_2a 329 361 IPR002110 GO:0005515
Dere04g2260 588 SMART ANK_2a 295 325 IPR002110 GO:0005515
Dere04g2260 588 MobiDBLite consensus disorder prediction 560 580 - -
Dere04g2260 588 Gene3D - 239 471 IPR036770 -
Dere04g2260 588 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Dere04g2260 588 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Dere04g2260 588 SMART BTB_4 63 189 IPR000210 GO:0005515
Dere04g2260 588 Pfam NPR1/NIM1 like defence protein C terminal 371 572 IPR021094 -
Dere04g2260 588 CDD BTB_POZ_NPR_plant 52 176 - -
Dere04g2260 588 Pfam Ankyrin repeats (3 copies) 277 355 IPR002110 GO:0005515
Dere04g2260 588 Pfam BTB/POZ domain 59 147 IPR000210 GO:0005515
Dere04g2260 588 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2260 Dere-ChrDere04 26589445 26595884 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere04g2260 NPR1_like_C 6.2e-86 No_clan