Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2257 ATGGAGGAGGTGGGTAATTATAAGGCAATAATGAATGGATCAGAGAAGACTTATAAGGAAGAAAAAGAAGAGGAAGAGGAAGAAGAAGAAGGTATGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTCGTTGGGTTTTATCTAAAGCGGAAGGTTGAGAAGAAGCCTCTTCGAATCGAACTCATCAAACACATTGACATCTACAAATACGATCCTTGGGATCTTCCAAGGATCGACAAGCCTATCCACTCCCTCAAAGAGCCTCACCACTGCATCGGCCTCAAGAAGTCTCTCGTCTACTACCGTGGCTCCGCCGGCAAAGGCACCAAGACTGACTGGATGATGCACGAGTTTCGCCTCCCTCCGAACCCTACCGCCATCTCCAATGACACCAACACTAATAATCTTCAAGAAGCTTTAGCTCATCAAGCTCCTTCTTCAACATCAACAGTGACTAATAATAATTATGAGCATCAGAATGTGGAGGATGTGTTTGCCAATGGAAACTGGGATGAGCTCAGATCAGTGGTTCAGTTCGCCGTTGATCCTTCAGCAATTTATGATTGTACAGGCTTTTAG 585 0.4496 MEEVGNYKAIMNGSEKTYKEEKEEEEEEEEGMLPGFRFHPTDEELVGFYLKRKVEKKPLRIELIKHIDIYKYDPWDLPRIDKPIHSLKEPHHCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNPTAISNDTNTNNLQEALAHQAPSSTSTVTNNNYEHQNVEDVFANGNWDELRSVVQFAVDPSAIYDCTGF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2257 194 Gene3D NAC domain 41 80 IPR036093 GO:0003677|GO:0006355
Dere04g2257 194 MobiDBLite consensus disorder prediction 12 36 - -
Dere04g2257 194 SUPERFAMILY NAC domain 29 127 IPR036093 GO:0003677|GO:0006355
Dere04g2257 194 ProSiteProfiles NAC domain profile. 32 180 IPR003441 GO:0003677|GO:0006355
Dere04g2257 194 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 79 - -
Dere04g2257 194 Gene3D NAC domain 81 160 IPR036093 GO:0003677|GO:0006355
Dere04g2257 194 Pfam No apical meristem (NAM) protein 34 79 IPR003441 GO:0003677|GO:0006355
Dere04g2257 194 Pfam No apical meristem (NAM) protein 81 122 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2257 Dere-ChrDere04 26489345 26493604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2257 20 123 NAC Transcription Factor Family AT5G39820 50.704 5.05e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere04g2257 NAM 3.6e-13 No_clan