Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2228 ATGGAATTAGAGGGTGATTTAATGGACAAACATTCCAGGACTTCTATGTCAAGTCATGGTGCTGCAGGGGCTACAGGTCCATTGGAAATTTCTCCACTTAATGGTTCCAGAAGAGTGGAAACCAGTGCATGGGATATATCACATGTGACTGATGCATATCATGCATCAAGTGACGTTAGCTTGTTTTCTAGTTCACTGCCTGTCCTTCGACATGAAAAGTTAAATAATACTAATTCAGAGCATTATGGTCAATCTATTGATGATAACTTTCCAATATTAAACAATTGCAAGGAAGATGAGGGACATGATCGTTTTGGAGATGTTGACACTAATGCAATTGGAAACATGCTTCCTGATGATGAAGACTTATTAGCTGGGATGACGGATGACTTTGACCTTAGTAGGTTGCCCAGCCAACTGGAGGATCTGGATGAAAGTGACCTGTTTGGTAGTGGAGGGGGATTTGAAATGGATTGTGAACCCCAAGAGAGCCTTGCTTTTGGTTTGTCAAGGATAAGCATATCTGGTAAAGTTGCTTCAAATAGTACTATTGGTCATTATGCACCACCAAATGGTGTGGGAACAGTGGCTGGCGAGCATCCCTATGGAGAGCACCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGATGATAATGAATTGAGATCACTATTTGAGCAATATGGGGATATCAGAACTTTATACACTGCATGCAAGCACAGGGGCTTTGTGATGATATCTTACTACGACATTAGAGCTGCTCGCAATGCAATGCGTGCTTTACAAAACAAGCCCTTACGACGAAGAAAACTTGACATTCATTTTTCGATACCTAAGGATAATCCCTCAGAAAAGGATATTAACCAAGGAACTCTCGTAGTGTTCAATTTGGATCCATCGGTATCAAATGATGACCTTTGTAAAATATTTGGTGATTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCGGCAGATGCAGCTCTTAAAGCATTAAATAATAGTGATATTGCTGGGAAGCGCATCAAGCTTGAACCCAGCCGCCCCGGTGGAGCACGTCGAAATTTAATACAACAGCTAAGCCAAGAGCTGGAACAAGATGAAGCTTGGACTTTTAGACATCATGTGGGTTCGCCAATGGCCAATTCTCCTCCTGGTAACTGGGCTCAATTTGGCAGTCCAGTTGAACGTAATCCTCTTGGTTCTTTTAACAAGCTACCTGGTTTGGGTCATTCCAGTCCGAATAGCCACCAATTGCCTGGACTAACCACTCTTTCCCCGCATGCATCAACCTCCACAAAAGTTGTGCCTATTGGCAAGGATACTGGAAGTGTTAGTGATGCAAATAAGATACTTTCTGACTCTGGATCAACACAGGGAGTACCTTTTCAGCATTCTCTGTCCTTTCCTGAACTAAATGTAAATGCAATTCCTAGGTCAATATCTACTTTTGGAGAACGAAATTCAAGCTCATCAAGCCTTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACAAATCTAGTGGCCTATTAAGTTCAAACGCATCTGCTTGGTCTTCATATTCCACGGGGCTCCCATATAAATCTAGTGGCCAGAGGCACGGTTTCCCATACATTAGTCAGCCTAGCTCTCTTCTTGGTTCCCACCCCCATCATCATGTGGGATCTGCTCCATCTGGCTCTCCTCTTGATAGGCATTTTAACTACTTTCCAGAGTCTCCAGAAGCTTCTTTCATGAACCCAGCTGCATTTGGGAGTCTGAATCACCGTGATGGAAATTTTATGAACATGGGTGCTCGTGGTACTGTAGGAGTTGGTGTTGGCCTTTCAGGAAATACAACTGAAATTAGTTCACCCAGTTTCAGAATGATGCCGCTTCCAAGACATGGTTCCTCTTTCCTTGCAAATGGTTCCTTTTCTGGAGCAGGAGCTACTAACAGTGAGGGATTAGCTGAATACAGTAGAAGTCGGCGACTTGAAAACAATGGCACCCTATATGATAGCAATAAGCAGTATCAGCTTGATCTGGACAAAATTGTCAGTGGGGAAGATCCAAGGACTACTTTAATGCTTAAGAACATTCCTAACAAGTACACCTCAAAGATGCTGGTGGCAGCAATCGATGAGAATCACAAGGGTACTTACGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGTTATGCTTTCATCAATATGGTGTCTCCTTTGCACATCATCCCATTCTATAAGGCATTTAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCACTGGCATATGCTCGAATCCAGGGAAAGGCTGCACTGGTGATGCACTTTCAGAATTCAAGCCTAATGAATGAGGATAAGCGGTGCCGGCCAATTCTCTTCCACTCAGAGGGCCAAGAGACTGGTGATCAGGAATCTCTCCTATCAAGCAATTTGAACATATGCATCCTCCAGCCAGATGGGTCGTACACTGGCGATTCGTTGGACAGCCCAGAGGACAATATGGATTAA 2589 0.4268 MELEGDLMDKHSRTSMSSHGAAGATGPLEISPLNGSRRVETSAWDISHVTDAYHASSDVSLFSSSLPVLRHEKLNNTNSEHYGQSIDDNFPILNNCKEDEGHDRFGDVDTNAIGNMLPDDEDLLAGMTDDFDLSRLPSQLEDLDESDLFGSGGGFEMDCEPQESLAFGLSRISISGKVASNSTIGHYAPPNGVGTVAGEHPYGEHPSRTLFVRNINSNVDDNELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLCKIFGDYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNNSDIAGKRIKLEPSRPGGARRNLIQQLSQELEQDEAWTFRHHVGSPMANSPPGNWAQFGSPVERNPLGSFNKLPGLGHSSPNSHQLPGLTTLSPHASTSTKVVPIGKDTGSVSDANKILSDSGSTQGVPFQHSLSFPELNVNAIPRSISTFGERNSSSSSLGTLSGPQFLWGSPTPYKSSGLLSSNASAWSSYSTGLPYKSSGQRHGFPYISQPSSLLGSHPHHHVGSAPSGSPLDRHFNYFPESPEASFMNPAAFGSLNHRDGNFMNMGARGTVGVGVGLSGNTTEISSPSFRMMPLPRHGSSFLANGSFSGAGATNSEGLAEYSRSRRLENNGTLYDSNKQYQLDLDKIVSGEDPRTTLMLKNIPNKYTSKMLVAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMVSPLHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQETGDQESLLSSNLNICILQPDGSYTGDSLDSPEDNMD 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2228 862 SUPERFAMILY RNA-binding domain, RBD 205 368 IPR035979 GO:0003676
Dere04g2228 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 274 IPR000504 GO:0003723
Dere04g2228 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 360 IPR000504 GO:0003723
Dere04g2228 862 Gene3D - 196 291 IPR012677 -
Dere04g2228 862 SMART rrm1_1 294 362 IPR000504 GO:0003723
Dere04g2228 862 SMART rrm1_1 710 786 IPR000504 GO:0003723
Dere04g2228 862 SMART rrm1_1 209 277 IPR000504 GO:0003723
Dere04g2228 862 CDD RRM1_MEI2_like 207 283 IPR034453 -
Dere04g2228 862 PANTHER RNA RECOGNITION MOTIF-CONTAINING 57 826 - -
Dere04g2228 862 MobiDBLite consensus disorder prediction 394 458 - -
Dere04g2228 862 FunFam Protein MEI2-like 1 292 387 - -
Dere04g2228 862 Pfam RNA recognition motif 2 708 804 IPR007201 -
Dere04g2228 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 366 IPR000504 GO:0003723
Dere04g2228 862 MobiDBLite consensus disorder prediction 425 456 - -
Dere04g2228 862 Gene3D - 292 388 IPR012677 -
Dere04g2228 862 MobiDBLite consensus disorder prediction 1 33 - -
Dere04g2228 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 281 IPR000504 GO:0003723
Dere04g2228 862 SUPERFAMILY RNA-binding domain, RBD 710 795 IPR035979 GO:0003676
Dere04g2228 862 FunFam MEI2-like protein 5 isoform 2 197 291 - -
Dere04g2228 862 CDD RRM3_MEI2_like 711 796 IPR034454 -
Dere04g2228 862 CDD RRM2_MEI2_like 292 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2228 Dere-ChrDere04 26034347 26040912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2228 203 403 Eukaryotic Initiation Factors Gene Family AT1G71770 24.123 3.59e-06 48.9