Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2224 ATGGCTGTGGCGAAACCAGCAGCCGCAGCTTTCACAACTAACGAGAGGGTAAGCCCCAAAACGGTGCAACAAGCCGTGAATTCGCTCCTCAAATGGAGGAATTCCAAGTCCGAGGTCGAGAAACCGAAGCTATTTGACCAAGACGATGAGTTTGTCTACCTCATCTTCACCCTCAAGAAAATCCCTCCAAAGTCTCGTGTCAATGCTCACAAGATTCCTCTTCCGCATTCTTTTCTATCCGAATTCTCTGAGCTCTGTTTGATCATCGATGACAGATCCAAGTCGAATCTCACCAAAGAGGACGCGCAGAAGAAGATCAAATCGGAGAATATTCCCGTTTCTAAAGTTCTTAAGCTTTCGAAGCTCACCTCCAATTATCGTCCCTTCGAGGCCAAGCGGAAGCTCTGTGATTCTTACCACATGTTTTTCGCCGATAGAAGGGTGATACCGCTGTTGCCGCGGCTACTGGGTAAGCATTTCTTTAAGAAGAAGAAGATTCCTGTGCCAGTGGATTTGAAGCATAAGAATTGGAAGGAGCAGATTGAGAAGGCATGCTCGTCGGCATTGTTATTCCTGAGGACGGGTACCTGTAGTGTGGTAAGAGTTGCCAAAGTGTCAATGGAAAAGGACGAGATCGTCGCGAATGTAGTTGCGGCAATCAATGGGATTGTTGAGCTCGTGCCGAAAAAGTGGGGCGCTGTGCGGTCGTTTCATTTGAAGTTGTTGGATTCGATTTCATTGCCGCTTTATCAGGCAGTTCCTGATATGAAATTGAAGATTGAGGGAGCTAAGAACACGGGAGATGCTGAGAAAGAGGATAGTGATACTGTTAAAGATGCAGCTAAGAAGGATCTTAAAGTTGGCAAGAAGAAGGGGAGGATTCATGAAGTTCGGTACATGGATGATATTGATAATGCTGGTAGCGAACTCGGTCAAGATGAGTCAGGTGGTGAAGATGGTGGGGATATAGAGGAAGAAGATAATTTGAACGATGAAATGATTGGTGGAGCATTGGTGGACAAGAAGAAAAAGAAAGGGACTAAAACGGACAAAGGGGCTCTTATTGAGCTGAATGGTATGAAAGGATTGAAGAAGTCAGCCGAGGGTAAGGATAAAAGTAAGAAAGATGGGTTGTCTTCAAAAGGGAAGAAGAAGAATATTACCAAGCAGAAGGAAAATGATTTACCTGCTGAGTATGGAGAGTCTGGAAAGAAGAAAAAGAAGAGAAATGATGATACGAAAGAAAAGGCTAAGAAAATTAAGAAGGCTGCATAA 1275 0.4439 MAVAKPAAAAFTTNERVSPKTVQQAVNSLLKWRNSKSEVEKPKLFDQDDEFVYLIFTLKKIPPKSRVNAHKIPLPHSFLSEFSELCLIIDDRSKSNLTKEDAQKKIKSENIPVSKVLKLSKLTSNYRPFEAKRKLCDSYHMFFADRRVIPLLPRLLGKHFFKKKKIPVPVDLKHKNWKEQIEKACSSALLFLRTGTCSVVRVAKVSMEKDEIVANVVAAINGIVELVPKKWGAVRSFHLKLLDSISLPLYQAVPDMKLKIEGAKNTGDAEKEDSDTVKDAAKKDLKVGKKKGRIHEVRYMDDIDNAGSELGQDESGGEDGGDIEEEDNLNDEMIGGALVDKKKKKGTKTDKGALIELNGMKGLKKSAEGKDKSKKDGLSSKGKKKNITKQKENDLPAEYGESGKKKKKRNDDTKEKAKKIKKAA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2224 424 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 25 244 - -
Dere04g2224 424 CDD Ribosomal_L1 22 249 IPR028364 -
Dere04g2224 424 FunFam Ribosomal protein L1p/L10e family 95 186 - -
Dere04g2224 424 Pfam Ribosomal protein L1p/L10e family 45 244 IPR028364 -
Dere04g2224 424 MobiDBLite consensus disorder prediction 315 331 - -
Dere04g2224 424 MobiDBLite consensus disorder prediction 301 424 - -
Dere04g2224 424 Gene3D - 95 187 IPR016095 -
Dere04g2224 424 MobiDBLite consensus disorder prediction 363 424 - -
Dere04g2224 424 MobiDBLite consensus disorder prediction 336 351 - -
Dere04g2224 424 SUPERFAMILY Ribosomal protein L1 47 250 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2224 Dere-ChrDere04 25951650 25952924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2224 138 240 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 33.010 1.03e-10 59.3