Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2213 ATGGAGCTTCCAAATCAAGCAGTGGCAGAAGTAGAGGGATCGTCTTCTCAGAAGAAGAATGGACGAGGGAAAATAGAGATAAAGAGGATAGAGAACTCAACGAACAGGCAAGTGACCTTCTGTAAGAGACGCAATGGGTTGCTGAAGAAAGCTTATGAACTGTCTGTGCTTTGTGATGCTGAAGTTGCTCTCGTCGTCTTCTCTAGTCGTGGTCGGTTGTACGAGTATGCTAACAACAGTGTTAGAGCAACTATAGAGAGGTACAAGAAAGCATGTGCTGCTTCCTCAAACACAGAATCTGTAGCTGAAGCTAACACACAGTTTTACCAACAAGAATCATCCAAGTTAAGAAGGCAGATACATGATATTCAGAATCTAAACAGGCACATCCTTGGGGAAGCTCTGAGCTCTTTGAGTCTTAAGGAACTGAAGAATCTAGAGGGAAGATTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTTGCTGAAGTTGAATTCATGCAAAAGAGGGAAATAGAGCTGCAAAACCATAACAATTATCTGCGAGCAAAGATAGCAGAACATGAGAGAGCACAACAACAGCAACCCAATGTGATGCAGGGAAGTGTGTGTGAGTCCATACCTTCACAATCTTATGATCGCAATTTCTTCCCTGTCAATCTCTTGGCTTCCAATAGTCATCAGTATCCTCGTCATGATCATCAGACTGCTCTCCAGCTTGTGTAA 741 0.4265 MELPNQAVAEVEGSSSQKKNGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREIELQNHNNYLRAKIAEHERAQQQQPNVMQGSVCESIPSQSYDRNFFPVNLLASNSHQYPRHDHQTALQLV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2213 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 Gene3D - 32 125 IPR036879 GO:0003677|GO:0046983
Dere04g2213 246 Coils Coil 179 199 - -
Dere04g2213 246 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Dere04g2213 246 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Dere04g2213 246 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 MobiDBLite consensus disorder prediction 1 24 - -
Dere04g2213 246 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g2213 246 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Dere04g2213 246 SUPERFAMILY SRF-like 21 96 IPR036879 GO:0003677|GO:0046983
Dere04g2213 246 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g2213 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2213 Dere-ChrDere04 25645101 25652920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2213 16 246 MADS-box Gene Family AT3G58780 70.711 3.57e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere04g2213 K-box 1.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g2213 04 25645101 25652920 Dere04g2213 04 25645101 25652920 ECH