Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2174 ATGGCTCCCAGTTTCGTATTCGAACCTCCCAGCGACGAAGAAGTCGAACAGTCTGAAATTGAAGATGAAGAACATGAGCAAAGCAGAGAAGAGGAAGAAGAAGAACACTCTGAAATTGAAGACGAAGAACAGGAAGAAGAGCAAAGTGAGGATGAAGAAGAAGGAAGGGCATGGGTTTCGAATAAGAAGTCTCAGTCTCCATGGGACTTCGCTAAGTACTCTGAGTCCGTCGCGGACGAACATGCTCGACGAAGTACAACCTCAGTTGATCAGAAAATTGCTAAAGCCCTTAAAGAACGCTCCACCCCTCTCAGAAGGCCCATCGAAGATGACATTGAGAGCTCAGAGTCGGAACCCGACAAACAAGAAGATTATAGACCAGAAGATGAAGAAGACGAAGATGGCAATGTCTGCGAAAGCAAGTCTTTCTTCGCTCCACCTGACGGAGCTTCGTTCCATGCTGATTCATTCATGGAGCTTAACTTGTCCCGCCCTTTGCTCCGGGCTTGTGAGGCTTTAGGATACGTTAAACCAACACCAATCCAGGCAGCATGTATCCCATTGGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGTTCCGGGAAGACAGCTGCATTTGCACTACCTACTCTGGAGAGGCTTTTGTTCCGTCCAAAACGCATGCAAGCAATAAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGTATGATAGAGAACCTTGCTCAGTTTACTGATATAAGCTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCAGCCTTGAGATCAATGCCAGATATTGTTGTGGCTACTCCTGGGCGCATGATAGATCATTTGCGCAATTCAATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGATCGTCTATTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGTCTTTGTCCCAAAAAAAGGCAGACCATGCTATTTTCAGCAACCATGACTGAGGAAGTTGATGAGCTTATTAAACTTTCCCTGACAAAACCATTACGTCTTTCTGCTGACCCATCTGCAAAACGGCCTGCAACATTAACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGCTCCAAAACTTTTACTTCAAAAGTGATCATATTCAGTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGGCTTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGACTTGAAGCTTTGGAGAAGTTCAGGAAACAGCAAGTTGACTTTTTGGTGGCAACTGATGTGGCTGCGCGAGGCCTTGACATCATTGGTGTTCAAACAGTTATCAACTTTGCATGCCCCCGTGATCTTACCAGCTATGTTCATCGAGTAGGTCGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTAACGCTTGTGACTGACAATGACCGGTCGCTTTTAAAAGCAATTGCAAAGCGGGTGGGTTCAAAGCTGAAGAGCCGCAATGTTGCAGAGCAATCTATAATCAAGTGGTCTCATGTAATTGAGCAAATGGAGGATGAAATTGCTGCAGTTCTTCAAGAAGAGAGGGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCAACAAAGGCTGAAAACATGATTGAGCATAAGGAAGAGATTTATTCCCGCCCCAAAAGAACCTGGTTTATGACGGAGAAGGAGAAGAAGCTTGCTGCAAAAGCAGCAAAAAAATCTAATGAAAATGAGAAGACTTCTGGGAAGGAGGTAATGAGTGCTCAGGAAGCTGAAACCCTAAGAATGAAGGAAAAGAGGAAACGGGAGCGAGAGAAAAATTTGCCCAGGAAGAAGCGTAGAAAATTGGAAGCAGCTAGAGAGATGTTAGAGGATGATGGGCATGTTGATAAGCCAGAATCTAATGGGCAAAATAAGAAAGAGAAGGCTGGAATGTCACTAGTTGATCTGGCTTACCGACGGGCGAAGGCAGTGAAGGCTGTGAAGAAGGCACTAGATGCTGGGAAGATTGTGAAGAAGGGTAAAAAGAAGTCTAATCATTCTTCCTATAAGACTCCTTCAAGGACGGAAGAAATGAAGGAGCTTTTCCAAACTGACATGAGTGAGAAAAAGCAAAGAAGAGGTGTTGGAGCAGGGAAGAAGTCCAAAAGTTCGTTCAAAAGCAAGTCAAGGTATAAGCGTAGGTAG 2280 0.4465 MAPSFVFEPPSDEEVEQSEIEDEEHEQSREEEEEEHSEIEDEEQEEEQSEDEEEGRAWVSNKKSQSPWDFAKYSESVADEHARRSTTSVDQKIAKALKERSTPLRRPIEDDIESSESEPDKQEDYRPEDEEDEDGNVCESKSFFAPPDGASFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMQAIRVLILTPTRELAVQVHSMIENLAQFTDISCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEKFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTLVTDNDRSLLKAIAKRVGSKLKSRNVAEQSIIKWSHVIEQMEDEIAAVLQEEREERALRKAEMEATKAENMIEHKEEIYSRPKRTWFMTEKEKKLAAKAAKKSNENEKTSGKEVMSAQEAETLRMKEKRKREREKNLPRKKRRKLEAAREMLEDDGHVDKPESNGQNKKEKAGMSLVDLAYRRAKAVKAVKKALDAGKIVKKGKKKSNHSSYKTPSRTEEMKELFQTDMSEKKQRRGVGAGKKSKSSFKSKSRYKRR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2174 759 Coils Coil 540 580 - -
Dere04g2174 759 MobiDBLite consensus disorder prediction 113 136 - -
Dere04g2174 759 CDD SF2_C_DEAD 372 504 - -
Dere04g2174 759 SMART helicmild6 410 495 IPR001650 -
Dere04g2174 759 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Dere04g2174 759 MobiDBLite consensus disorder prediction 1 137 - -
Dere04g2174 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 534 IPR001650 -
Dere04g2174 759 SMART ultradead3 174 375 IPR014001 -
Dere04g2174 759 Gene3D - 371 557 IPR027417 -
Dere04g2174 759 MobiDBLite consensus disorder prediction 641 669 - -
Dere04g2174 759 Coils Coil 619 639 - -
Dere04g2174 759 MobiDBLite consensus disorder prediction 12 53 - -
Dere04g2174 759 MobiDBLite consensus disorder prediction 740 759 - -
Dere04g2174 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Dere04g2174 759 Coils Coil 13 52 - -
Dere04g2174 759 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Dere04g2174 759 Pfam DEAD/DEAH box helicase 179 349 IPR011545 GO:0003676|GO:0005524
Dere04g2174 759 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 30 711 - -
Dere04g2174 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 360 IPR014001 -
Dere04g2174 759 MobiDBLite consensus disorder prediction 599 677 - -
Dere04g2174 759 Gene3D - 119 362 IPR027417 -
Dere04g2174 759 CDD DEADc_DDX27 166 361 - -
Dere04g2174 759 MobiDBLite consensus disorder prediction 74 112 - -
Dere04g2174 759 MobiDBLite consensus disorder prediction 714 739 - -
Dere04g2174 759 Pfam Helicase conserved C-terminal domain 391 495 IPR001650 -
Dere04g2174 759 MobiDBLite consensus disorder prediction 599 634 - -
Dere04g2174 759 MobiDBLite consensus disorder prediction 696 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2174 Dere-ChrDere04 24905553 24913694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2174 111 512 Eukaryotic Initiation Factors Gene Family AT3G13920 32.924 1.25e-50 181