Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2148 ATGTTTCGCCTTTGTGAAAAGCCTATTTCTCAGAGTTCTTCTTTTCCAAGTATGATGATGAGAGCAGAATCTGTAATAAGGTGTAGAGAGATTGTTTCTTTGTGGGCTGGGATGTTCATGAAAGCCATGGACAGAGTTGTTTTCGCTGCATTCACCTGCATTCTGGCACTAGGAGGGTCAATAATGGGGACAATAGTGGGAGGCATTAAGGGTCAGACCACAGAAGCTGGAATTCTTGATGGAGCAGGGAAGGGAGCAGTCACAGGGGCCATTGCAGCTCTAGAATTGCTTGATTTTGGAGATGATGATGATACTGAGCCTCTTTCCAAGGTTGCTCTACTGAGCAGTTTATTCAATGGGAAGGTCCTCATGGAATGGGTATATCCAGCTTATCAATGGCATATTGGCATACCGGAAACAATATACAGAGAAGTATCAGATATTTATGATATCAGAGGTGTTCCTGGCTTGTCCCAGAGTTTTATTCAAAAGCTTCCTTTGTATCAATTCAACCCTGGCAAAATGTTAAGGTTATTCAATGAGTCATGCTGCTCCATTTGCCTTCAGGAGTTTGAGGATGGAGAGGTGGTGAGGATACTTCCAAAATGTGACCACATATTTCACTTTGATTGCGTAGACAAATGGCTAATCCAACAAGGGGCTTGCCCTGTTTGTAGAACTTATGTTGCAGATCACATTGAGGCTTAG 708 0.4294 MFRLCEKPISQSSSFPSMMMRAESVIRCREIVSLWAGMFMKAMDRVVFAAFTCILALGGSIMGTIVGGIKGQTTEAGILDGAGKGAVTGAIAALELLDFGDDDDTEPLSKVALLSSLFNGKVLMEWVYPAYQWHIGIPETIYREVSDIYDIRGVPGLSQSFIQKLPLYQFNPGKMLRLFNESCCSICLQEFEDGEVVRILPKCDHIFHFDCVDKWLIQQGACPVCRTYVADHIEA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2148 235 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Dere04g2148 235 Pfam Ring finger domain 184 226 IPR001841 -
Dere04g2148 235 SMART ring_2 184 225 IPR001841 -
Dere04g2148 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 35 227 IPR044523 -
Dere04g2148 235 CDD RING-H2_EL5-like 183 226 - -
Dere04g2148 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 231 IPR013083 -
Dere04g2148 235 SUPERFAMILY RING/U-box 178 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2148 Dere-ChrDere04 24605704 24607896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2148 46 231 C3H Transcription Factor Family AT1G74410 36.548 1.56e-34 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g2148 04 24605704 24607896 Dere04g2148 04 24605704 24607896 ECH