Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2147 ATGGGTCTCTGTGTTAGTAAAAGCAAAGATTCAGAGGGAGAACATAATGGGTACACATCAATTGGGGCAACCGGAGTGCAAAATCACAAAACCCACGATCCCTATGTGAATCAAACGAAATCCTCTTCTCATCAACCTCGTCAATTGCCCGGAAAGCCCTCCGTTCTGGCTCACAAGCGCGATTCGATTCTGGGGAAGCCATTTGAAGATGTTAAGCAGCTCTACACAATTGGGAAGGAACTGGGTAGGGGTCAGTTTGGAGTAACCTATCTCTGCACTGAGAATTCAACTGGTAGACCGTACGCGTGCAAGTCAATCTCGAAGAGGAAGCTTGTGAGCCAAGCTGATAAGGAGGATATGAAGAGAGAGATTCAGATTATGCAGCATTTGAGTGGACAGCCCAATATTGTGGAGTTCAAAGGTGCGTATGAAGATAATAATTCGGTTCATCTTGTGATGGAGCTGTGTGAAGGTGGTGAGCTCTTTGATCGGATTATTGCCAAGGGGCATTACAGTGAAAGGGCTGCCGCTTCGATATGCAGGCAGATTGTTAACGTTGTTCATATCTGCCACTTTATGGGCGTAATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTGTCCAGTAAGGATGAAAATGCCCTTCTCAAAGCCACAGATTTTGGTTTGTCAGTTTTTATTGAGGAAGGAAAGGTTTATCGGGATATAGTTGGGAGTGCTTATTATGTAGCTCCTGAAGTTCTACGGCGCAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATACTGTATATCTTGCTCAGTGGTGTTCCTCCTTTTTGGGCTGAGACGGAAAAGGGAATATTTGATGCCATATTGGAAGGTCATATTGATTTTGAAAGTCAACCATGGCCAAGCATATCGAACAGTGCCAAGGACCTTGTTTGTAGGATGCTGACACAGGACCCGAAGAAACGCATTACTTCTGCTCAGGTTTTAGAGCACCCATGGATTAGAGAAGATGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAGCTAAAGAAACTTGCCCTAAAGGTAATTGCGGAAAATCTTTCTGAAGAAGAGATCCAAGGGTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGTGGTACAATCACCTACGAGGAACTGAAGGCAGGATTGCAGAGACTCGGCTCAAAGCTCACAGAGGCTGAAGTCCAGCAGCTTATGGAAGCTGCTGATGTTGATGGAAATGGCACAATTGACTACATAGAGTTCATCACTGCTACAATGCATAGACATAGACTAGAAAGAGATGAACATCTTTACAAAGCCTTCCAGTATTTCGATAAAGATAACAGTGGGTTCATAACAAGAGATGAACTTGAAACTGCCATGAAAGAATACGGCATGGGCGATGAAGCCACAATCAGGGACATCATATCAGAAGTTGACACAGATAATGATGGTAGGATCAATTATGAAGAATTCTGCACAATGATGAGGAGTGGAACCCAGCAAGGCAAGTTATTCTGA 1569 0.4347 MGLCVSKSKDSEGEHNGYTSIGATGVQNHKTHDPYVNQTKSSSHQPRQLPGKPSVLAHKRDSILGKPFEDVKQLYTIGKELGRGQFGVTYLCTENSTGRPYACKSISKRKLVSQADKEDMKREIQIMQHLSGQPNIVEFKGAYEDNNSVHLVMELCEGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPSISNSAKDLVCRMLTQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVQQLMEAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEATIRDIISEVDTDNDGRINYEEFCTMMRSGTQQGKLF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2147 522 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Dere04g2147 522 FunFam Calcium-dependent protein kinase 1 341 516 - -
Dere04g2147 522 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Dere04g2147 522 ProSiteProfiles EF-hand calcium-binding domain profile. 484 518 IPR002048 GO:0005509
Dere04g2147 522 CDD EFh 381 440 IPR002048 GO:0005509
Dere04g2147 522 SMART serkin_6 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2147 522 FunFam Calcium-dependent protein kinase 1 77 160 - -
Dere04g2147 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 70 508 - -
Dere04g2147 522 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Dere04g2147 522 MobiDBLite consensus disorder prediction 15 49 - -
Dere04g2147 522 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2147 522 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Dere04g2147 522 FunFam calcium-dependent protein kinase 1 161 340 - -
Dere04g2147 522 CDD EFh 455 513 IPR002048 GO:0005509
Dere04g2147 522 SMART efh_1 452 480 IPR002048 GO:0005509
Dere04g2147 522 SMART efh_1 416 444 IPR002048 GO:0005509
Dere04g2147 522 SMART efh_1 380 408 IPR002048 GO:0005509
Dere04g2147 522 SMART efh_1 487 515 IPR002048 GO:0005509
Dere04g2147 522 SUPERFAMILY Protein kinase-like (PK-like) 75 340 IPR011009 -
Dere04g2147 522 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Dere04g2147 522 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Dere04g2147 522 ProSiteProfiles Protein kinase domain profile. 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2147 522 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Dere04g2147 522 Coils Coil 398 418 - -
Dere04g2147 522 CDD STKc_CAMK 75 332 - -
Dere04g2147 522 Gene3D - 342 517 - -
Dere04g2147 522 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Dere04g2147 522 Gene3D Phosphorylase Kinase; domain 1 76 160 - -
Dere04g2147 522 Gene3D Transferase(Phosphotransferase) domain 1 161 341 - -
Dere04g2147 522 SUPERFAMILY EF-hand 372 512 IPR011992 -
Dere04g2147 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Dere04g2147 522 Pfam EF-hand domain pair 381 441 IPR002048 GO:0005509
Dere04g2147 522 Pfam EF-hand domain pair 451 513 IPR002048 GO:0005509
Dere04g2147 522 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2147 Dere-ChrDere04 24584255 24587827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2147 59 522 EF-hand Containing Proteins AT3G20410 84.154 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere04g2147 Pkinase 1.3e-75 CL0016