Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2141 ATGTCAAACATTAATAATCATAATGACACAGAGAATAATGAAATTGGGTTACTTTCCATAATCAGTAATGGCAGACGAGGTGAAGGTGGTGAGGGCGCTGGTGGAGTGGCAATTATGACAGAGGAGGTGATCCTCAAGAAAGGTCCATGGACTGCGGCGGAAGATGTTGTGCTTATAGATTATGTGACGAAGCATGGTGAAGGAAATTGGAATGTTGTGCAGAGGAATACGGGGTTAGCTCGTTGTGGCAAGAGCTGTAGATTAAGATGGACTAACCATTTGCGACCCAATCTGAAAAAAGGTGCTTTCTCTCCTGAGGAAGAGAAGCTCATTCTGAAGCTCCATGCCCAGTATGGCAATAAATGGGCTCGAATGGCCACTCTCTTACCTGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACTAGGGTGAAGCGCCGCCAGCGGCAAGGCTTGCCTCTTTATTCCAATGACCCTGATCAACCAAGCACATCAACTGCACCCACCACTTGCACTACACAACTAACCACTATATCCACTACTTCAAATTCTAAGTATTGTCATCAAAACCAATATCCTCTATCTTCACTTCATACCAGAACCTCTTATTCCAGACACACCCCTTTCTTGGACCCCACTTCTCTTTCTTCTTCTTCTTCCTCATCTCCTTTCTTCACCTATCACCAACATACTCCTCCTTTGCAAATTACTGCACTTCATTCCAAGCGTTATCGAACATCTCCGTCAATCATAGATCCGCCTTTAACTACGCCATTGACTGATCTTGAAGGATTTAACTTTCCTACTCAATTTAATTCTAGTTTGTCTCAAATCTTTCAAACCCCATTAGAGTCATCATCTTCAATTTTAGGGGTTTCGACCCCTTCTTCCATTTTCTTGACTAAAACGGAGCTCCCTTCAAACCAATTTTCCCAATCCAATAATAACCCTACTTTGTCTACTAGTACTGATTTATTAGGTGATATCCTGCATGAAGCTCAAGCATTGGTCTCTAGCCAAAATTTAAAGAAACGAAGCTACTCGAGTTTTAGTGAAGGAAATGATGCCTTTTATGGATGTCAAGGCTTGGATGATTTGCCTTCAGGATTGAAACCCAAAGTAGAACCATCAGGCCTAAGCGAATCCATGAATGACCTTTCTTCACTATTTTCGGGAATGCCTCCCACCAATCAAGTTCCAGATTGGCACAATGACATTGCTACACAAGTCTCTGATGTCCAATCGTTTGGTGCCATCATGCCAGATGATGATTTTATACTTGACTTTAAGCATATTGCTTCATTACTTCCTATCACCACCTTAACAAACCCTGACGAAAACCCTGGCTTTTACTCTTGGGACTTTTTACCTGGACTTTGCTGA 1386 0.4235 MSNINNHNDTENNEIGLLSIISNGRRGEGGEGAGGVAIMTEEVILKKGPWTAAEDVVLIDYVTKHGEGNWNVVQRNTGLARCGKSCRLRWTNHLRPNLKKGAFSPEEEKLILKLHAQYGNKWARMATLLPGRTDNEIKNYWNTRVKRRQRQGLPLYSNDPDQPSTSTAPTTCTTQLTTISTTSNSKYCHQNQYPLSSLHTRTSYSRHTPFLDPTSLSSSSSSSPFFTYHQHTPPLQITALHSKRYRTSPSIIDPPLTTPLTDLEGFNFPTQFNSSLSQIFQTPLESSSSILGVSTPSSIFLTKTELPSNQFSQSNNNPTLSTSTDLLGDILHEAQALVSSQNLKKRSYSSFSEGNDAFYGCQGLDDLPSGLKPKVEPSGLSESMNDLSSLFSGMPPTNQVPDWHNDIATQVSDVQSFGAIMPDDDFILDFKHIASLLPITTLTNPDENPGFYSWDFLPGLC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2141 461 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Dere04g2141 461 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Dere04g2141 461 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 29 370 - -
Dere04g2141 461 MobiDBLite consensus disorder prediction 151 171 - -
Dere04g2141 461 Gene3D - 102 148 - -
Dere04g2141 461 FunFam MYB-related transcription factor 46 99 - -
Dere04g2141 461 Gene3D - 46 99 - -
Dere04g2141 461 ProSiteProfiles Myb-like domain profile. 45 94 IPR001005 -
Dere04g2141 461 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Dere04g2141 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Dere04g2141 461 FunFam Transcription factor GAMYB 102 148 - -
Dere04g2141 461 SMART sant 99 147 IPR001005 -
Dere04g2141 461 SMART sant 46 96 IPR001005 -
Dere04g2141 461 SUPERFAMILY Homeodomain-like 46 141 IPR009057 -
Dere04g2141 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Dere04g2141 461 CDD SANT 49 94 IPR001005 -
Dere04g2141 461 MobiDBLite consensus disorder prediction 155 171 - -
Dere04g2141 461 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2141 Dere-ChrDere04 24527831 24529963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2141 20 461 MYB Transcription Factor Family AT4G26930 36.623 5.16e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g2141 Myb_DNA-binding 8.3e-12 CL0123