Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2133 ATGCCATTCCACATTTCTGCAAGTATTTCTGCCGTCACGCCTTTCTCGGAAATTGAGGCATTAATTGATGGGGATAATTTGGTCTCACATATTCTCACTTTTTATTCCCCACTTTGCTCTGTCTCTTGCCCTCTCACCATAAATACCACTTCTTCCTCTGTTTTCTACTCACCAATCTTCTCTCCTTCTAAACCCTCTTCCTACTCTTCACTACTCAGATCATTGAGAGCAATGGCTGTAATAACCATCTTCGGCATTGTTTCCCTCCTCTCTTTTCTCACCACCACCGACGCCAGAATACCCGGTGTCTACTCAGGCGGGGCATGGCAGAGTGCTCACGCTACTTTCTATGGTGGAAGCGACGCCTCTGGCACCATGGGAGGGGCGTGCGGGTATGGAAACTTGTACAGCCAAGGGTACGGCGTGAACACGGCAGCCCTGAGCACAGCTCTGTTCAACAATGGCTTCAGCTGCGGAGCTTGCTTCGAAATCAAATGCGCCAATGACCCACGGTGGTGCCACGCCGGCAGCCCGTCGATCTTCGTCACCGCCACAAACTTCTGCCCTCCGAACTATGCTCTCCCCAGCGACAATGGCGGCTGGTGTAACCCTCCCAGACCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATAGCCGAGTACCGCGCCGGCATCGTCCCCGTCTCTTACCGCCGGGTGCCATGCAGGAAACGCGGAGGGATGAGGTTCACGATCAACGGGTTCCGTTACTTCAACTTGGTGCTGATCACGAACGTCGCGGGTGCAGGGGATATCGTGAGGGCTAGCGTAAAAGGGTCTCGCACAGGGTGGACGAGCATGAGCAGGAACTGGGGTCAGAACTGGCAGTCAAACGCCGTCCTGGTTGGTCAGTCACTGTCCTTCAGGGTCACAGGCAGTGACCGACGCACCTCTACTTCCTGGAATATCGTCCCCTCCAATTGGCAATTTGGCCAAACCTTCACCGGCAAGAATTTCAGGGTGTAA 1008 0.5427 MPFHISASISAVTPFSEIEALIDGDNLVSHILTFYSPLCSVSCPLTINTTSSSVFYSPIFSPSKPSSYSSLLRSLRAMAVITIFGIVSLLSFLTTTDARIPGVYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPRWCHAGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKRGGMRFTINGFRYFNLVLITNVAGAGDIVRASVKGSRTGWTSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2133 335 SMART dpbb_1 144 231 IPR007112 -
Dere04g2133 335 Pfam Expansin C-terminal domain 242 319 IPR007117 -
Dere04g2133 335 FunFam Expansin 241 333 - -
Dere04g2133 335 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 251 330 IPR007117 -
Dere04g2133 335 FunFam Expansin 98 237 - -
Dere04g2133 335 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 127 241 IPR007112 -
Dere04g2133 335 Pfam Lytic transglycolase 144 231 IPR009009 -
Dere04g2133 335 PRINTS Expansin signature 216 229 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 180 190 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 287 308 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 139 153 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 240 252 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 252 273 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 199 216 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 166 177 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin signature 316 332 IPR002963 GO:0009664
Dere04g2133 335 PANTHER EXPANSIN-A15 91 333 IPR002963 GO:0009664
Dere04g2133 335 PRINTS Expansin/Lol pI family signature 108 123 IPR007118 GO:0005576
Dere04g2133 335 PRINTS Expansin/Lol pI family signature 148 166 IPR007118 GO:0005576
Dere04g2133 335 PRINTS Expansin/Lol pI family signature 278 292 IPR007118 GO:0005576
Dere04g2133 335 PRINTS Expansin/Lol pI family signature 126 144 IPR007118 GO:0005576
Dere04g2133 335 PRINTS Expansin/Lol pI family signature 224 240 IPR007118 GO:0005576
Dere04g2133 335 PRINTS Expansin/Lol pI family signature 316 330 IPR007118 GO:0005576
Dere04g2133 335 SUPERFAMILY PHL pollen allergen 238 330 IPR036749 -
Dere04g2133 335 CDD DPBB_EXPA_N 109 236 - -
Dere04g2133 335 Gene3D - 242 333 IPR036749 -
Dere04g2133 335 Gene3D - 96 237 IPR036908 -
Dere04g2133 335 SUPERFAMILY Barwin-like endoglucanases 108 259 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2133 Dere-ChrDere04 24455286 24457255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2133 77 335 Expansin Gene Family AT2G39700 85.714 1.53e-168 467