Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2129 ATGCTTGCCTCTTCAATGGCGCTAATTCATCAATTTTCCATGCCCGTCGCACGTTTGGTGCGGCCTTCACATCGGACTCGCCTTCGGTCTTGCACCATGGCCGTCGTACCCTCCTCCACGCGCGACCTTTCTGTCCCTTCTACAACACGCGACCCCCAGTCGCAGGTCCTACTTGGGTTGTCCGAGAAAGAGTTGCAACAGGTGGCTGTTGACTTGGGTCAGCAAAGCTTTAGAGGGAAGCAAATTCATCATCTTATCTACCAGAGAAAGGTCAGAGAGATACAGGATTTATATCAGTTGCCTCAGGCGTTTAGGGATGATCTTCAGGAAGCTGGATGGAGGGTGGGGCGGTCTCCTATTTTCCGTGCTGTCACTGCAGCTGATGGGACTATCAAGTTGTTGTTAAAGCTGGATGACAACAGATTGATTGAAACTGTTGGTATTCCGGTTAAAGACAATAATGGTTCAGTTCGCCTAACTGCATGTGTCTCATCACAGGTTGGTTGCCCATTACGTTGCTCATTCTGTGCCACTGGAAAAGGGGGTTTTTCACGGAATCTTGGAAGACATGAAATTGTTGAGCAGGTTTTGGCCATCAAGGAGGTATTCAAGTGCAGAGTGTCAAACGTAGTGTTCATGGGAATGGGTGAGCCAATGTTAAACCTGAAGAGGGTGCTTGAAGCACACCATTGCTTGAACAAGGATGTGCAAATTGGGCAAAGAATGATTACCATCTCCACTGTGGGAGTTCCAAATACAATAACGAAGCTGGCATCTCACAAACTTCAATCTACATTAGCAGTGAGCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCTTACCCATTGGATGCACTTATGAGAGACTGCAAGGAGTACTTCCTTCAAACCAGCAGACGAATTTCCTTTGAGTATGCACTTTTAGCCGGAGTCAATGATTCAGTAGATCATGCAGCAGAACTTGCTCAGCTACTCCATAAATGGGGCCATGGTTATCATGTGAACCTAATACCTTTCAATCCAATAGAAGGATCTGAGTATCGGCGACCATATAAAAAAGCAGTGCAGGCATTTGTTTCTGCTTTAGAGTCATCTAAAATAGCTGTTAGTGTACGGCAAACAAGAGGACTGGATGCAAATGCAGCTTGTGGTCAACTACGAAACCAATTCCAGAAAAGTCCTTTGGTCACTGATCCTGACAATCAGCAATCCCAGCTGCCTAATATGGATCTTGCAGTGATGTTGAGAGATCTGGGAGATGTGGAGGGACAACTATATGGTCTGTTGACAGAGATGTTTGGAGCATGTAGGCCTGCATTGTCTACTTTTGGTCGTGTTCTATTCACTTGCCATAATGTTCAATCCAAGATCTTACTCTCAGAAATCGTCGACATAAAACGAAACGCACACAATATAGAGGAAGATATGGCAATTGGGTTAATGGAGGTGCTGCTGGTGAAAGCAAAGGGGCTTCAGGAGACTGATATCTTTGCCCGTATGGATCCGTATGTTCTGATACAATACAAAGGCCAAGAACGCAAGAGCAGCGTACTTCATGAGCAAGGCAGCAACCCTGTATGGAATGAGAAATTTGTATTCAGTGTAGAATACCCTGGATCAGGCCAGCCATATAAGCTTGTTCTTAAAATCATGGACAAGGACGTATTTTCTGCAGATGACTTTGTCGGCCAAGCCACAATCTATGTGGAAGATTTATTGGCTTTAGGAGCAGAGAAGGGAGCAGCTGAGCTTCACCCTCGCAAGTACAATGTGGTTCGTCAAGACCAATCATACTGTGGGGAAATTGAAGTTGGCATAACTTTCACTCGAAAGGCAGAATTGGAAACTACTGAAGAAGAATTTGGAGGATGGAAAGAAAGCTACAATTAG 1911 0.4511 MLASSMALIHQFSMPVARLVRPSHRTRLRSCTMAVVPSSTRDLSVPSTTRDPQSQVLLGLSEKELQQVAVDLGQQSFRGKQIHHLIYQRKVREIQDLYQLPQAFRDDLQEAGWRVGRSPIFRAVTAADGTIKLLLKLDDNRLIETVGIPVKDNNGSVRLTACVSSQVGCPLRCSFCATGKGGFSRNLGRHEIVEQVLAIKEVFKCRVSNVVFMGMGEPMLNLKRVLEAHHCLNKDVQIGQRMITISTVGVPNTITKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMRDCKEYFLQTSRRISFEYALLAGVNDSVDHAAELAQLLHKWGHGYHVNLIPFNPIEGSEYRRPYKKAVQAFVSALESSKIAVSVRQTRGLDANAACGQLRNQFQKSPLVTDPDNQQSQLPNMDLAVMLRDLGDVEGQLYGLLTEMFGACRPALSTFGRVLFTCHNVQSKILLSEIVDIKRNAHNIEEDMAIGLMEVLLVKAKGLQETDIFARMDPYVLIQYKGQERKSSVLHEQGSNPVWNEKFVFSVEYPGSGQPYKLVLKIMDKDVFSADDFVGQATIYVEDLLALGAEKGAAELHPRKYNVVRQDQSYCGEIEVGITFTRKAELETTEEEFGGWKESYN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2129 636 PANTHER 23S RRNA METHYLTRANSFERASE 28 410 IPR040072 -
Dere04g2129 636 CDD C2_putative_Elicitor-responsive_gene 486 609 - -
Dere04g2129 636 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 56 396 IPR027492 GO:0030488|GO:0070475
Dere04g2129 636 CDD Radical_SAM 168 361 - -
Dere04g2129 636 ProSiteProfiles C2 domain profile. 468 592 IPR000008 -
Dere04g2129 636 Gene3D Aldolase class I 119 402 IPR013785 -
Dere04g2129 636 Gene3D C2 domain 484 617 IPR035892 -
Dere04g2129 636 FunFam Probable dual-specificity RNA methyltransferase RlmN 118 402 - -
Dere04g2129 636 Pfam Radical SAM superfamily 164 321 IPR007197 GO:0003824|GO:0051536
Dere04g2129 636 Gene3D - 55 111 - -
Dere04g2129 636 SFLD adenosine C2 methyltransferase (RlmN-like) 53 399 IPR004383 GO:0006364|GO:0008173
Dere04g2129 636 SFLD Radical SAM 53 399 IPR007197 GO:0003824|GO:0051536
Dere04g2129 636 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 479 618 IPR035892 -
Dere04g2129 636 SMART C2_3c 487 588 IPR000008 -
Dere04g2129 636 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 54 399 IPR027492 GO:0030488|GO:0070475
Dere04g2129 636 ProSiteProfiles Radical SAM core domain profile. 155 385 IPR007197 GO:0003824|GO:0051536
Dere04g2129 636 SUPERFAMILY Radical SAM enzymes 143 358 - -
Dere04g2129 636 Pfam C2 domain 488 581 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2129 Dere-ChrDere04 24426274 24434438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2129 485 591 C2H2 Transcription Factor Family AT4G05330 35.514 6.87e-11 62.4