Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2128 ATGGGTTGCTGCTTTAGTGCGAGGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGATTTCAAAGGATGGTAGCAAAAGTGAGGATGGTTTGAGTGGTTCAAGTGGCAAGATCACCAGTACCTCTGTGCCTCCAACTCCTCGGTCAGAGGGTGAGATCTTGAATTCCTCCAATATGAAGAGCTTCAGCTTCAATGAGCTAAAAACTGCTACAAGAAACTTTCGTCCAGATAGTGTGGTGGGAGAAGGTGGATTTGGCTGTGTGTTTAAGGGGTGGATTGATGAGCATACACTTTTACCAGTTAAACCAGGGACTGGACTTGTTATTGCTGTGAAGAGGCTTAACCAAGAAGGCCTCCAGGGACACAGTGAATGGTTGACAGAAATAAACTACCTGGGGCAGCTGCATCATCCTAATCTAGTGAAACTGATTGGTTACTGCTTAGAGGATGACCACCGGATATTGGTATATGAATTTTTGGCCAAGGGCAGTTTGGATAACCATTTGTTTAGGAGGGCTTCTTACTTTCAACCACTTTCTTGGAGCATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGACCAAGCAGAAGTGATATATCGAGACTTCAAAACTTCTAACATCTTGCTTGATTCGAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAGGATGGACCAGCAGGTGATAAGAGCCATGTCTCCACAAGAGTAATGGGCACCTATGGCTATGCTGCTCCTGAGTATATGGCCACAGGTCACTTGACTAAAAGGAGTGACGTATACAGTTTTGGGGTTGTTCTCCTGGAAATCATATCTGGCAAACGTGCATTGGACAATAACAGGCCATCCGGGGAGCACAATTTAGTGGAATGGGCAAAGCCTCTCCTCAGCAGCAGACGGCGAATTTTCCAAGTTATGGATGCTCGTCTTGATGGCCTGTACTCACAGCGTGAAGCCATGAAAGTGGCTAACCTTGCACTTCAATGCCTGTCTGCAGAACCAAAACTTAGACCAAACATGGAGGAGGTGGTTAGAGCATTGGAACAACTTCAGGATTCCAGTGACACAGATACAGTGGCGGGGAGTTCACAAAATCAAACTGTCAAAACAAGTAGTCATAATAGCTCAAGCAGCAGTGGTCCTAAGCAACATAGAAGAAGTATCAATGAATCCTTAAATAGAGAAGGTACTTCTACTTCAAGACCATCAGCTTCTCCTCTTCGTACATAA 1257 0.4495 MGCCFSARIKAESPPRNGLISKDGSKSEDGLSGSSGKITSTSVPPTPRSEGEILNSSNMKSFSFNELKTATRNFRPDSVVGEGGFGCVFKGWIDEHTLLPVKPGTGLVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDHRILVYEFLAKGSLDNHLFRRASYFQPLSWSIRMKVALDAAKGLAFLHSDQAEVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKRSDVYSFGVVLLEIISGKRALDNNRPSGEHNLVEWAKPLLSSRRRIFQVMDARLDGLYSQREAMKVANLALQCLSAEPKLRPNMEEVVRALEQLQDSSDTDTVAGSSQNQTVKTSSHNSSSSSGPKQHRRSINESLNREGTSTSRPSASPLRT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2128 418 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Dere04g2128 418 PANTHER OS01G0588500 PROTEIN-RELATED 41 360 - -
Dere04g2128 418 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2128 418 Gene3D Transferase(Phosphotransferase) domain 1 160 385 - -
Dere04g2128 418 MobiDBLite consensus disorder prediction 27 54 - -
Dere04g2128 418 SUPERFAMILY Protein kinase-like (PK-like) 51 358 IPR011009 -
Dere04g2128 418 MobiDBLite consensus disorder prediction 13 54 - -
Dere04g2128 418 CDD STKc_IRAK 80 359 - -
Dere04g2128 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Dere04g2128 418 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Dere04g2128 418 FunFam Probable serine/threonine-protein kinase PBL8 160 377 - -
Dere04g2128 418 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Dere04g2128 418 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Dere04g2128 418 MobiDBLite consensus disorder prediction 359 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2128 Dere-ChrDere04 24421857 24424826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2128 1 401 Glycoside Hydrolase AT3G07070 41.446 3.62e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere04g2128 PK_Tyr_Ser-Thr 1.1e-45 CL0016