Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2125 ATGAGAAAACCTTGCTGTGACAACGAAGGCAACAACAAGGGCGCTTGGTCCAAGCAAGAAGACCAAAAACTTATCGACTACATCCGATCTCACGGTGAAGGCTGCTGGCGTTCCATTCCCAAGGCTGCAGGGTTGCATCGTTGCGGAAAAAGTTGCAGGCTGAGATGGATCAATTATTTAAGACCAGATATCAAACATGGAAACTTTGGCCCTGATGAAGAAGACCTCATCATCAAGCTCCATGCCCTCCTTGGAAACAGGTGGTCACTAATAGCCGGAAGGTTGCCGGGGCGTACAGACAATGAAATAAAGAATTATTGGAACTCTCACATCCGAAGGAAGCTAATGAAGATGGGAATTGATCCCAATAACCATAAGCTACACCACTGCTTTCCTCGTCCTCGTGTTTCTGAATCTGAGGCTGAATCATCCTCTGGGTCCATGAACAAAGAACATCATAACGTGCCCTTCGTCAAATCTTGCGGTGCTGCTGCTAATGATAAAGTTTCAGACACAGAGAGCTGTCTTGAAGAAGAAAGTACACCAACGGATTCATCCCGCGTGAATCTTGAGCTAACCATTGCTTTCCCTTCTCCTAAGCTCGTCCATGAAGAAGACGAAGCGAAGCCAAATTATTCTGAGTCCTCCAGCACAAGGGACGTGGAGAGTGAATCGGCTTCAACAACTCTTCTTCTCTTTGGATAA 705 0.4638 MRKPCCDNEGNNKGAWSKQEDQKLIDYIRSHGEGCWRSIPKAAGLHRCGKSCRLRWINYLRPDIKHGNFGPDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEIKNYWNSHIRRKLMKMGIDPNNHKLHHCFPRPRVSESEAESSSGSMNKEHHNVPFVKSCGAAANDKVSDTESCLEEESTPTDSSRVNLELTIAFPSPKLVHEEDEAKPNYSESSSTRDVESESASTTLLLFG 234
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2125 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dere04g2125 234 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dere04g2125 234 Gene3D - 13 65 - -
Dere04g2125 234 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dere04g2125 234 CDD SANT 68 111 IPR001005 -
Dere04g2125 234 Gene3D - 68 138 - -
Dere04g2125 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dere04g2125 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 200 - -
Dere04g2125 234 FunFam MYB transcription factor 67 128 - -
Dere04g2125 234 CDD SANT 15 60 IPR001005 -
Dere04g2125 234 FunFam MYB-related transcription factor 12 65 - -
Dere04g2125 234 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dere04g2125 234 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Dere04g2125 234 MobiDBLite consensus disorder prediction 214 234 - -
Dere04g2125 234 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Dere04g2125 234 SMART sant 65 113 IPR001005 -
Dere04g2125 234 SMART sant 12 62 IPR001005 -
Dere04g2125 234 MobiDBLite consensus disorder prediction 197 234 - -
Dere04g2125 234 MobiDBLite consensus disorder prediction 127 153 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere04g2125 Dere-ChrDere04 24375091 24376305 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2125 2 198 MYB Transcription Factor Family AT4G09460 52.582 5.31e-74 223
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g2125 Myb_DNA-binding 1.9e-15 CL0123