LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2125	ATGAGAAAACCTTGCTGTGACAACGAAGGCAACAACAAGGGCGCTTGGTCCAAGCAAGAAGACCAAAAACTTATCGACTACATCCGATCTCACGGTGAAGGCTGCTGGCGTTCCATTCCCAAGGCTGCAGGGTTGCATCGTTGCGGAAAAAGTTGCAGGCTGAGATGGATCAATTATTTAAGACCAGATATCAAACATGGAAACTTTGGCCCTGATGAAGAAGACCTCATCATCAAGCTCCATGCCCTCCTTGGAAACAGGTGGTCACTAATAGCCGGAAGGTTGCCGGGGCGTACAGACAATGAAATAAAGAATTATTGGAACTCTCACATCCGAAGGAAGCTAATGAAGATGGGAATTGATCCCAATAACCATAAGCTACACCACTGCTTTCCTCGTCCTCGTGTTTCTGAATCTGAGGCTGAATCATCCTCTGGGTCCATGAACAAAGAACATCATAACGTGCCCTTCGTCAAATCTTGCGGTGCTGCTGCTAATGATAAAGTTTCAGACACAGAGAGCTGTCTTGAAGAAGAAAGTACACCAACGGATTCATCCCGCGTGAATCTTGAGCTAACCATTGCTTTCCCTTCTCCTAAGCTCGTCCATGAAGAAGACGAAGCGAAGCCAAATTATTCTGAGTCCTCCAGCACAAGGGACGTGGAGAGTGAATCGGCTTCAACAACTCTTCTTCTCTTTGGATAA	705	0.4638	MRKPCCDNEGNNKGAWSKQEDQKLIDYIRSHGEGCWRSIPKAAGLHRCGKSCRLRWINYLRPDIKHGNFGPDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEIKNYWNSHIRRKLMKMGIDPNNHKLHHCFPRPRVSESEAESSSGSMNKEHHNVPFVKSCGAAANDKVSDTESCLEEESTPTDSSRVNLELTIAFPSPKLVHEEDEAKPNYSESSSTRDVESESASTTLLLFG	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2125	234	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	61	115	IPR017930	-
	Dere04g2125	234	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Dere04g2125	234	Gene3D	-	13	65	-	-
	Dere04g2125	234	ProSiteProfiles	Myb-like domain profile.	8	60	IPR001005	-
	Dere04g2125	234	CDD	SANT	68	111	IPR001005	-
	Dere04g2125	234	Gene3D	-	68	138	-	-
	Dere04g2125	234	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	8	60	IPR017930	-
	Dere04g2125	234	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	200	-	-
	Dere04g2125	234	FunFam	MYB transcription factor	67	128	-	-
	Dere04g2125	234	CDD	SANT	15	60	IPR001005	-
	Dere04g2125	234	FunFam	MYB-related transcription factor	12	65	-	-
	Dere04g2125	234	Pfam	Myb-like DNA-binding domain	13	60	IPR001005	-
	Dere04g2125	234	Pfam	Myb-like DNA-binding domain	67	110	IPR001005	-
	Dere04g2125	234	MobiDBLite	consensus disorder prediction	214	234	-	-
	Dere04g2125	234	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Dere04g2125	234	SMART	sant	65	113	IPR001005	-
	Dere04g2125	234	SMART	sant	12	62	IPR001005	-
	Dere04g2125	234	MobiDBLite	consensus disorder prediction	197	234	-	-
	Dere04g2125	234	MobiDBLite	consensus disorder prediction	127	153	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2125	Dere-ChrDere04	24375091	24376305	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2125	2	198	MYB Transcription Factor Family	AT4G09460	52.582	5.31e-74	223

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere04g2125		Myb_DNA-binding	1.9e-15	CL0123