Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2119 ATGGACACTTCTTCTTCCTCGGAGGGTCATAATAGCCCCGACACGAATTTCGAAGCTGATACACCCCGAACGCCTATAGCCGTCCGTCGAGCCCTTCGGCTACTCCGATCGGACGATCCGGATTGTCGGCTCCAAGCCGCTCGGGATATCCGGCGCCTCACCAAGACCTCGCAGCGCTGTCGGCGCCAGCTCGCTGAAGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTTCCATATACCGGCTCTTCTCGCTTTGCTTAATCTTGCCGTTAAGGACGAAAAGAACAAAATCAACATTGTGGAAGCAGGTGCTTTAGAACCTATAATTAGTTTCCTCGAGTCACAAAATTTAGATCTGCGGGAGTACGCAACTGCATCTTTGCTCACTCTATCTGCCTCTTCAACCAACAAGCCAATTATTAGTGCTTCTGGGGCGATTCCTCTTCTTGTGGAGATTCTTAGAGATGGAAGCCCCCAAGGTAAAGCTGATGCAGTGATGGCTCTCTCCAATTTATCCACATTCCCAGATAACCTCAGTATCATTCTTGAAACAAATCCAGTCCCATATATAGTCAGTCTTCTTAAAGCCTGTAAAAAATCCTCAAAAACAGCTGAGAAATGCTGTGCTTTAATGGAATCCTTGGTAGGTTTTGATGAGGGGAGAACTGCCTTGACATCTGAAGCAGGTGGGGTTCTTGCGGTTGTGGAAGTTCTCGAAAATGGTAATCTCCAAAGTAGGGAGCACGCTGTTGGAGCACTATTGACAATGTGCCAAAGTGACCGATGTAAATACCGGGAACCGATTCTCAGAGAAGGTGTGATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACCCCTAAATCTCAGTTGAAAGCACGTACCCTTTTGCAGTTACTCAGGGAGTCTCCTTATCCAAGGTCTGAAATCCAACCTGACACTCTTGAGAATATAGTATGCAACCTCATATACCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTCTGAGACATTTACAGCAAAGGGCTCTTGTATGTACCCCAAGTGATCTTCCTATTAGCAACTGTGCTTCTGAAGTTCCTTCGAAATGA 1149 0.4735 MDTSSSSEGHNSPDTNFEADTPRTPIAVRRALRLLRSDDPDCRLQAARDIRRLTKTSQRCRRQLAEAVGPLVSMLRVDSPEFHIPALLALLNLAVKDEKNKINIVEAGALEPIISFLESQNLDLREYATASLLTLSASSTNKPIISASGAIPLLVEILRDGSPQGKADAVMALSNLSTFPDNLSIILETNPVPYIVSLLKACKKSSKTAEKCCALMESLVGFDEGRTALTSEAGGVLAVVEVLENGNLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQLKARTLLQLLRESPYPRSEIQPDTLENIVCNLIYQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPISNCASEVPSK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2119 382 SUPERFAMILY ARM repeat 28 332 IPR016024 -
Dere04g2119 382 PANTHER U BOX DOMAIN-CONTAINING 26 310 - -
Dere04g2119 382 FunFam U-box domain-containing protein 4 13 364 - -
Dere04g2119 382 Gene3D - 26 220 IPR011989 -
Dere04g2119 382 SMART arm_5 179 221 IPR000225 GO:0005515
Dere04g2119 382 SMART arm_5 222 263 IPR000225 GO:0005515
Dere04g2119 382 SMART arm_5 57 95 IPR000225 GO:0005515
Dere04g2119 382 SMART arm_5 138 178 IPR000225 GO:0005515
Dere04g2119 382 SMART arm_5 97 137 IPR000225 GO:0005515
Dere04g2119 382 Gene3D - 221 363 IPR011989 -
Dere04g2119 382 Pfam Armadillo/beta-catenin-like repeat 98 136 IPR000225 GO:0005515
Dere04g2119 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 108 150 IPR000225 GO:0005515
Dere04g2119 382 MobiDBLite consensus disorder prediction 1 19 - -
Dere04g2119 382 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2119 Dere-ChrDere04 24296147 24299539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2119 12 305 U-box Gene Family AT2G23140 33.446 3.09e-39 146