LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2116	ATGATGGGTTTCTACCAAGGGACAACCTGCACTGACTATCGCGAGCCTTCCAAGGCACCCAACGCTCTATACGCTTCCTCTGTAGTTGCAGATCACTACTGTGACTACAACAAGCTCAAATTCAGGACCATCCTGAGAAAAATGATCTGGGAGCTTGGGTTTGCCTGCGTTGCCCCGCCTCGACGCCGGCGAAGCTCCGGCAAAAGTCAGGGTCACGGCAAAAACGACCGCAGTGGCTGTAAAAAGACGAATCCGGAGCACAACAAGGCGTGGCTACTTGCGGAGTCTGGTGGGTGTGGAGCAGAGTTGACGAATGCGGACCCACAATCTGTTCACTCATCTTTCCGTTTCAGTTTCTGTTCTCAGGTTGAGCTGGAATCCTTGAGCATGAATTCTTCCGCTGCTGCAACCGTTTTGATGGTGAATCTAGACAATGGAATGAGTGATTCTCGTGCTCGAGAGCTGAAATGGAGGAGGATAGAGTCGTTGGAGAAAAGCATATCCCCTGTAGCCAACACTTTGATCAGGTTCAACTATGGTGAAATTGTATCTGCTACTCGCAATTTCTCCAAAGGCAGAGTATTGGGGAGAGGGGCCTTGAGCTGTGTGTTTAGGGGTAGAGTTGGCCTTTTGAGAACTGCTGTCGCAATCAAACGGTTGGACAAGGAAGACAAGGAATCTGCAAAAGCGTTCTGCAGAGAATTGATGATTGCGAGTTCTCTTCATAACCCAAACGTTGTTCCCCTTGTGGGTTTTTGTATTGACCCGGAGGAGGGTTTATTTCTGGTGTACAAATATGTCTCCGGGGGCAGTTTAGAGCACCACTTGCATGAGAGGAAGAAGGGTGTCAAGGGTAGTTCGTCACTTCCCTGGTCTGTGAGGTATAAAGTTGCAATTGGAATTGCAGAAGCTGTGGCTTATCTGCATAACGGAACCGAAAGATGCGTTGTTCACAGAGACATAAAGCCCTCAAACATTCTCCTTTCCTCTAAAAAGGCTCCCAAGTTATGTGATTTTGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAGGGAACATTTGGTTATTTGGCTCCTGAGTATTTCCAACATGGAAAGGTATCCGATAAGACCGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTCATAACTGGCCGGAAGCCAATTGAAGCGAAAAAGCCTCCAGGAGAGGAGAACTTGGTCTTATGGGCTAAACCCTTGCTACAGAAAGGGAAAGGAGCCATTGAAGAGTTGCTGGATCCTCAACTCAAGTGCAGCTTGAGATGCTCAAATCAGATGGCTCGGATGATTGAAGCAGCAGCTGCCTGTGTTACAAATGAAGAATCTCGGAGACCTGGAATACATGAGATTATTGCAATATTGAAAGGTGAAGAAGAACGTGTTTTGTCTAAAAGGAAGAAGTCTGGTCTACTTGGGAATGGATTGGTGATTGATTGCTACCCTCAGTTACAACAAAAAAACAATGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCGGAGTTTGAGGATGATGACTATCTCTATGGTCGTTGA	1587	0.4638	MMGFYQGTTCTDYREPSKAPNALYASSVVADHYCDYNKLKFRTILRKMIWELGFACVAPPRRRRSSGKSQGHGKNDRSGCKKTNPEHNKAWLLAESGGCGAELTNADPQSVHSSFRFSFCSQVELESLSMNSSAAATVLMVNLDNGMSDSRARELKWRRIESLEKSISPVANTLIRFNYGEIVSATRNFSKGRVLGRGALSCVFRGRVGLLRTAVAIKRLDKEDKESAKAFCRELMIASSLHNPNVVPLVGFCIDPEEGLFLVYKYVSGGSLEHHLHERKKGVKGSSSLPWSVRYKVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKAPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEAKKPPGEENLVLWAKPLLQKGKGAIEELLDPQLKCSLRCSNQMARMIEAAAACVTNEESRRPGIHEIIAILKGEEERVLSKRKKSGLLGNGLVIDCYPQLQQKNNEMKSHLALAMLGVSEFEDDDYLYGR	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2116	528	SMART	serkin_6	189	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g2116	528	Gene3D	Phosphorylase Kinase; domain 1	149	266	-	-
	Dere04g2116	528	MobiDBLite	consensus disorder prediction	60	84	-	-
	Dere04g2116	528	SUPERFAMILY	Protein kinase-like (PK-like)	170	469	IPR011009	-
	Dere04g2116	528	FunFam	Putative receptor-like serine/threonine-protein kinase	267	484	-	-
	Dere04g2116	528	MobiDBLite	consensus disorder prediction	69	84	-	-
	Dere04g2116	528	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	316	328	IPR008271	GO:0004672\|GO:0006468
	Dere04g2116	528	PANTHER	OS08G0249100 PROTEIN	137	483	IPR046958	-
	Dere04g2116	528	Gene3D	Transferase(Phosphotransferase) domain 1	267	485	-	-
	Dere04g2116	528	FunFam	probable serine/threonine-protein kinase PBL7	150	266	-	-
	Dere04g2116	528	Pfam	Protein kinase domain	190	466	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g2116	528	ProSiteProfiles	Protein kinase domain profile.	189	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2116	Dere-ChrDere04	24239885	24242577	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2116	177	506	Trihelix Transcription Factor Family	AT1G70460	40.896	3.90e-71	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Dere04g2116		Pkinase	4.8e-45	CL0016