Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2097 ATGGCTTCGTACTTGGATATGTCACTTGATGATAGGATAAAGAACAGAAGTAACAGACAGAGAGGTAGAGGACGTGGCAGAGCCCCTCGTGGCCGTGGACGAGGTGGGTTTCTTTGGGGAAGAATGACTGGTGTGGCACCTAGAGGTCCTCTTACAGTCAATGCTCGCCCATCGTCTTATGCCATTGCCAAGCCTATTCGCAAAACCAGGCCTTTTCCATGGCAACGTGATTTGTTTGAAGATAGTCTAAGAGCTGCAGGAATACCAGGAGTAGAAATTGGCACAAAGTTGTATGTTTCCAACTTGGACCGTGGAGTAACCAATGAAGATATAAGGGAACTTTTTTCTGAGATTGGAGGCATGAAGCGCTATGCGGTCCACTATGACAAAAATGGACTTCCAAGTGGCTCAGCTGAAGTTGTCTATGACAGAAGAAGCGATGCATTTGCTGCTCTTAAACGTTACAATAATGTGCTTCTCGATAGAAAGCCCATGAAGATTGAGATTGTTAGTGCCAATGCAGAATTGCCTATAACAGCTCGGGTGAATGTTACTGCAGTAACTGGGCAGAGGAAGAGGACAGTTGTGATGACGCCTGGAGGAGGTCGAACTGGAGGTCCTTCTATGTTTAATCGTGGTGCGGGACGTGCTCGTGGTGGTGCAAAGAGTGATACAGGAAATAGGGGTCGTGGCCGCAGAGCTGTGAGGGGCCGGGGCCGAGGCCGAGGTCGTGGGAAGGGCACAGTTGAGAAGTCGGCAGAGGAACTAGACAAAGAACTTGAGACCTATCATGCCGACGCTATGCACATTTCATAA 816 0.4877 MASYLDMSLDDRIKNRSNRQRGRGRGRAPRGRGRGGFLWGRMTGVAPRGPLTVNARPSSYAIAKPIRKTRPFPWQRDLFEDSLRAAGIPGVEIGTKLYVSNLDRGVTNEDIRELFSEIGGMKRYAVHYDKNGLPSGSAEVVYDRRSDAFAALKRYNNVLLDRKPMKIEIVSANAELPITARVNVTAVTGQRKRTVVMTPGGGRTGGPSMFNRGAGRARGGAKSDTGNRGRGRRAVRGRGRGRGRGKGTVEKSAEELDKELETYHADAMHIS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2097 271 SMART rrm1_1 96 168 IPR000504 GO:0003723
Dere04g2097 271 SMART FoP_duplication_2 201 271 IPR025715 -
Dere04g2097 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Dere04g2097 271 CDD RRM_THOC4 95 169 - -
Dere04g2097 271 Pfam C-terminal duplication domain of Friend of PRMT1 212 265 IPR025715 -
Dere04g2097 271 Gene3D - 92 173 IPR012677 -
Dere04g2097 271 SUPERFAMILY RNA-binding domain, RBD 26 169 IPR035979 GO:0003676
Dere04g2097 271 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 269 - -
Dere04g2097 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 172 IPR000504 GO:0003723
Dere04g2097 271 MobiDBLite consensus disorder prediction 1 35 - -
Dere04g2097 271 MobiDBLite consensus disorder prediction 195 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2097 Dere-ChrDere04 24032446 24036128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2097 94 169 Eukaryotic Initiation Factors Gene Family AT1G71770 34.211 2.84e-09 55.5