Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2089 ATGGCCAAAACCAGCTTTTTCTTCTCACACCCTATCATCTTCCTCGTTCTCATTATTATCAGTCTCTCCGTTCTCCCTTACCCTTCGCTCTCATCCTCCACGGACTCATTCCTCTACGGAGGGTGCACCCAGCAAAGGTACACCCCCAACTCGCCCTACGAGTCAAACCTCGACTCGCTACTCACCTCCCTCGTCAACTCAGCCACATACTCCACCTATGGCAACCTCACCGTCATCGGCTCCAGCCCCCAAGACGTCGTGTACGGGCTCTACCAGTGCCGCGCCGACCTCTCCATGCCCGACTGCGCCACCTGCGTCGCCCGCGCCGTCACCCGCGCTGGCGTCATCTGCTCCCAGACCTGCGGCGGGGCCGTCCAGCTCGAGGGCTGCTACGTCAAGTACGACAACGCCTCCTTCTTAGGCGTCGAGGACAAGACCGTCGTGCTGAAGAAATGCGGGCCGTCCGTCGGGTACAACTCGGACGCCATGGCCAGCCGGGACGCCGTTCTGTCCGGGTTGGCGGGTTCGGGCGGGCCGTTCCGGGTGGGTGGGTCCGGGAAAGTGCGGGGCATGGCACAGTGCACCGGCGATCTGAGCTTCGCGGAGTGCCAGGATTGCATCGGCGAGGCCATCGGACGGCTGAGAAGCGACTGTGGCACCGCCGATTACGGCGACATGTTCTTGGCCAAGTGCTACGCGAGGTACTCCACCGGTGGGGCCCACGCGTACTCTAAGGCCCATGACAGATCAAGCGATGAAGGGGAGAAGACATTTGCTATAATCATCGGATTATTAGCAGGAGTGGCCATACTTATCATTTTCCTTGCTTTCTTGAGAAAGCTTTGTGAAGATCGTGTGACTCCTTTTGTCGCCCTACTATGGGACATGTACGTCGCTCACCTAAACCTGACTGAATTTATTATTATTGGGAAAATCTTTAAGTTACCTGTTAAATTCTTCTGCGTCTTATTCGTTCTCTCGGGCAAGTCAACCAACTTGGTTTTTGCAGCATCAACAATGGGTGACAGTTTATTTGGGTACCCTTTCAGGCGCCTAATCTGGGGCCCTCCAATTTTCCGAGAATGGTCTGGATCAACGGCTCTTATGGATTGGCTTGAATCCCCTTCTGCCCATATCTTCAAAATCAACGTTCCAGGGTTCTGCAAAGATGACATAAAGGTGCAGATTGAGGATGGAAATATTTTGTACATCAAAGGAGAAGGTGGAAAAGAGGAGCCTCAAGCGAAAGATTGTGTTTGGCATGTGGCTGAGAGGGGCACCGGGAAGGGTGATTTTTCTCGCGCAATTGAATTGCCAGAAAATGTTAAGGTTGATCAGATTAAGGCACAGGTCGAAAATGGAGTTCTCACCTTAATTGTTCCCAAAGATGCCCCAAAATCGCCTAAAGTGCGAAACATTAACATCACTAGCAAGCTCTGA 1440 0.534 MAKTSFFFSHPIIFLVLIIISLSVLPYPSLSSSTDSFLYGGCTQQRYTPNSPYESNLDSLLTSLVNSATYSTYGNLTVIGSSPQDVVYGLYQCRADLSMPDCATCVARAVTRAGVICSQTCGGAVQLEGCYVKYDNASFLGVEDKTVVLKKCGPSVGYNSDAMASRDAVLSGLAGSGGPFRVGGSGKVRGMAQCTGDLSFAECQDCIGEAIGRLRSDCGTADYGDMFLAKCYARYSTGGAHAYSKAHDRSSDEGEKTFAIIIGLLAGVAILIIFLAFLRKLCEDRVTPFVALLWDMYVAHLNLTEFIIIGKIFKLPVKFFCVLFVLSGKSTNLVFAASTMGDSLFGYPFRRLIWGPPIFREWSGSTALMDWLESPSAHIFKINVPGFCKDDIKVQIEDGNILYIKGEGGKEEPQAKDCVWHVAERGTGKGDFSRAIELPENVKVDQIKAQVENGVLTLIVPKDAPKSPKVRNINITSKL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2089 479 ProSiteProfiles Gnk2-homologous domain profile. 140 240 IPR002902 -
Dere04g2089 479 FunFam Cysteine-rich repeat secretory protein 60 160 238 - -
Dere04g2089 479 CDD ACD_ScHsp26_like 369 462 - -
Dere04g2089 479 FunFam cysteine-rich repeat secretory protein 3 34 139 - -
Dere04g2089 479 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 13 282 - -
Dere04g2089 479 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 360 478 IPR002068 -
Dere04g2089 479 Gene3D - 34 139 IPR038408 -
Dere04g2089 479 Gene3D - 158 238 IPR038408 -
Dere04g2089 479 Pfam Hsp20/alpha crystallin family 370 476 IPR002068 -
Dere04g2089 479 Pfam Salt stress response/antifungal 185 237 IPR002902 -
Dere04g2089 479 Pfam Salt stress response/antifungal 42 136 IPR002902 -
Dere04g2089 479 Gene3D - 347 476 IPR008978 -
Dere04g2089 479 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
Dere04g2089 479 SUPERFAMILY HSP20-like chaperones 348 475 IPR008978 -
Dere04g2089 479 FunFam 15.7 kDa heat shock protein, peroxisomal 342 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2089 Dere-ChrDere04 23914211 23919429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2089 16 235 Pollen Coat Proteome AT4G20670 24.898 2.53e-14 71.2