Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2079 ATGGTGTCGTCTTCGAGATCATCTTCCTCGTCGTCGTCATCGTCGTCATCGGATGAGAGAGAGTATGAAGTTCAGGACCTGAGAGACAGGTTGAAATCGTCGCGAGGAAGTCGATTCGATTTGATAGAAAACGAGTTGGGACTCAATTGGACTCGGAGAAAGTTCGGTCGCCAAGTCCTCATCGATGGCATCCGAGGCTTCTCCAAAGATTTCATCATCCATCCGGATAACAGGTGGTATCGGGCGTGGACAAAATTCATATTGCTGTGGGCAGTGTACTCATCCTTCTTTACCCCAATGGAGTTTGGATTTTTTCGTGGGCTGGATGAGAATCTCTTTGTACTGGACATAATTGGACAAGTAGCATTTCTCGTAGACATTGTTTTGCAGTTCTTTCTTGCTTATAGAGACAGTCGGACCTATCGTATGATCTACAAGCGAACCCCTATAGCTCTGCGGTATCTGAAGTCTAGCTTTATCTTTGACCTTCTTGGATGTATGCCTTGGGACCTCATCTACAAGGCTTGTGGAAGAAGAGAGGAAATAAGGTATCTTTTGTGGATCAGATTATATCGGGTGCGGAAAGGCACTGATTTTTTCCAGAAGATGGAGAAGGATATACGTATCAATTACATGTTTACAAGGATTGTGAAACTCTTGGTAGTTGAACTCTACTGCACCCATACGGCAGCCTGCATCTTCTACTATTTGGCCACCACTCTACCTCAATCCCAAGAGGGGTACACATGGATAGGAAGTTTAAAGCTGGGTGACTATAGTTATTCACATTTCAGAGATATCGATCTTTGGAAGCGCTACACAACATCTTTGTATTTTGCTATTGTTACCATGGCTACTGTCGGCTATGGAGATATACATGCAGTCAATATGAGGGAGATGATATTCATAATGATATATGTTTCGTTTGACATGGTTCTTGGTGCTTATCTAATTGGTAACATGACGGCTTTAATAGTTAAAGGATCAAAGACAGAAAAGTTTAGGGATAGAATGACAGATCTTATAAAATATATGAATAGAAACAGACTTGGAAGGGACATTCGTGAACAAATAAAAGGCCATTTGCGCTTACAGTATGAGAGTAGCTACACTGAGCCAGCTGTCATTCAGGACATCCCCATTTCTATTCGATCTAAGATATCCCAAGAATTATATTTGCCATACATTGAAAAGGTTTCTCTCTTTAAGGATTGCTCTTCAGAATTCATCAATCAGATTGTTATAAGGCTCCATGAAGAATTCTTTCTCCCAGGAGAAGTGATTTTGGAACAAGGAAATGTTGTAGATCAACTATACTTCGTCTGTCATGGTGTGCTGGAAGAAGTAGGCACAGGTGAAGATGGATCTGAAGAGACTGTTTCACTTCTAGAACCTAACAGTTCGTTTGGGGAAATATCTATTCTATGTAACATGCCACAGCCATATACCGTTCGGGTTTGTGAACTATGTAGGCTTCTGCGGCTTGATAAACAATCATTTACAGATATCCTTGATATATACTTTTATGATGGGAGAAAAGTGTTAAACAACCTTCTAGAGGGCAAAGAATCTATTCGAGGTAAGCAATTGGAGTCAGACATCACTTTCCATATTGGGAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAATAGTGCAGCTTTTAATGGGGATCTGTATCAGCTTAAAGGTTTGATTCGGGCTGGAGCTGATCCAAACAAGACAGATTATGATGGACGGTCACCCTTACATCTTGCGGCATCTAGAGGATATGAAGATATCACTCTTTTCCTTATTCAGGAAGGTGTAGACATCAATATTAGAGATAACTTTGGGAATACACCCTTACTTGAAGCTGTGAAGAATGGGCATGATCGCATTGCTTCTTTACTTGTTGGAGAAGGGGCTTCTATAAAGATAGAGAATGCTGGTAGTTTTATATGTAATGCTGTTGCAAGGGGAGATTCAGACTATCTGAAAAGGCTATTATCTAATGGTATGGATCCTAACTTGAAAGATTACGATTACCGAAGCCCTCTTCATGTTGCTGCAGCTGAGGGTTTATTCTTCATGGCAAAGTTGCTGTTAGAAGCTGGAGCTAGTGTTTTTATCAAAGACAGATGGGGAAATACCCCACTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTATTGGAAGATGCTAAGTCTGCTCAGTTGTCAGAATGCCCACATCCCTCAGAATTTACAGATAAATTTCATCCGAAGAAATGTACAATCTTTCCCTTCCACCCATGGGATCCGAAAGATAATAGAAGACACGGAATTGTACTATGGGTTCCACGCATCATTGAAGAGCTTATCAAAACAGCAACAGAGCAGCTAGGAATTTCTAGTGATTGTTGTATTCTATCAGAAGATGCTGGAAAAATTACTGATGCGAATATGATTAAGGATGGTGAAAAGCTGTATTTAGTCCATGAAACACGTTAA 2478 0.4076 MVSSSRSSSSSSSSSSSDEREYEVQDLRDRLKSSRGSRFDLIENELGLNWTRRKFGRQVLIDGIRGFSKDFIIHPDNRWYRAWTKFILLWAVYSSFFTPMEFGFFRGLDENLFVLDIIGQVAFLVDIVLQFFLAYRDSRTYRMIYKRTPIALRYLKSSFIFDLLGCMPWDLIYKACGRREEIRYLLWIRLYRVRKGTDFFQKMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPQSQEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLIKYMNRNRLGRDIREQIKGHLRLQYESSYTEPAVIQDIPISIRSKISQELYLPYIEKVSLFKDCSSEFINQIVIRLHEEFFLPGEVILEQGNVVDQLYFVCHGVLEEVGTGEDGSEETVSLLEPNSSFGEISILCNMPQPYTVRVCELCRLLRLDKQSFTDILDIYFYDGRKVLNNLLEGKESIRGKQLESDITFHIGKQEAELALKVNSAAFNGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEGVDINIRDNFGNTPLLEAVKNGHDRIASLLVGEGASIKIENAGSFICNAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHVAAAEGLFFMAKLLLEAGASVFIKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLSECPHPSEFTDKFHPKKCTIFPFHPWDPKDNRRHGIVLWVPRIIEELIKTATEQLGISSDCCILSEDAGKITDANMIKDGEKLYLVHETR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2079 825 ProSiteProfiles Ankyrin repeat profile. 610 642 IPR002110 GO:0005515
Dere04g2079 825 ProSiteProfiles Ankyrin repeat region circular profile. 577 609 - -
Dere04g2079 825 PANTHER POTASSIUM CHANNEL AKT1 54 822 IPR045319 GO:0005249|GO:0006813
Dere04g2079 825 SUPERFAMILY cAMP-binding domain-like 329 518 IPR018490 -
Dere04g2079 825 ProSiteProfiles Ankyrin repeat region circular profile. 674 706 - -
Dere04g2079 825 SUPERFAMILY Ankyrin repeat 551 729 IPR036770 -
Dere04g2079 825 SUPERFAMILY Voltage-gated potassium channels 74 326 - -
Dere04g2079 825 ProSiteProfiles KHA domain profile. 752 825 IPR021789 -
Dere04g2079 825 ProSiteProfiles cAMP/cGMP binding motif profile. 401 521 IPR000595 -
Dere04g2079 825 ProSiteProfiles Ankyrin repeat region circular profile. 610 641 - -
Dere04g2079 825 PRINTS Ankyrin repeat signature 690 704 IPR002110 GO:0005515
Dere04g2079 825 PRINTS Ankyrin repeat signature 578 593 IPR002110 GO:0005515
Dere04g2079 825 CDD CAP_ED 401 515 IPR000595 -
Dere04g2079 825 MobiDBLite consensus disorder prediction 1 18 - -
Dere04g2079 825 MobiDBLite consensus disorder prediction 1 23 - -
Dere04g2079 825 PRINTS EAG/ELK/ERG potassium channel family signature 317 326 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g2079 825 PRINTS EAG/ELK/ERG potassium channel family signature 225 235 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g2079 825 PRINTS EAG/ELK/ERG potassium channel family signature 116 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g2079 825 PRINTS EAG/ELK/ERG potassium channel family signature 273 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere04g2079 825 FunFam Potassium channel KAT2 389 526 - -
Dere04g2079 825 ProSiteProfiles Ankyrin repeat profile. 577 609 IPR002110 GO:0005515
Dere04g2079 825 Gene3D - 534 643 IPR036770 -
Dere04g2079 825 Pfam Cyclic nucleotide-binding domain 421 505 IPR000595 -
Dere04g2079 825 Gene3D - 644 737 IPR036770 -
Dere04g2079 825 FunFam Potassium channel SKOR 81 326 - -
Dere04g2079 825 SMART ANK_2a 707 737 IPR002110 GO:0005515
Dere04g2079 825 SMART ANK_2a 610 639 IPR002110 GO:0005515
Dere04g2079 825 SMART ANK_2a 641 670 IPR002110 GO:0005515
Dere04g2079 825 SMART ANK_2a 674 703 IPR002110 GO:0005515
Dere04g2079 825 SMART ANK_2a 577 606 IPR002110 GO:0005515
Dere04g2079 825 FunFam Gated outwardly-rectifying K+ channel 616 742 - -
Dere04g2079 825 Gene3D Jelly Rolls 389 507 IPR014710 -
Dere04g2079 825 Gene3D - 83 327 - -
Dere04g2079 825 ProSiteProfiles Ankyrin repeat profile. 674 706 IPR002110 GO:0005515
Dere04g2079 825 SMART cnmp_10 401 519 IPR000595 -
Dere04g2079 825 Gene3D Helix hairpin bin 329 388 - -
Dere04g2079 825 Pfam Ion transport protein 81 326 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere04g2079 825 Pfam Ankyrin repeats (3 copies) 552 640 IPR002110 GO:0005515
Dere04g2079 825 Pfam Ankyrin repeats (3 copies) 648 728 IPR002110 GO:0005515
Dere04g2079 825 Pfam KHA, dimerisation domain of potassium ion channel 751 820 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2079 Dere-ChrDere04 23780212 23791200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2079 646 727 Ion Channels AT5G37500 34.615 7.44e-09 57.4