Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2078 ATGAATTATCGTGGTTGCATCTTGTCAAGCCTACACCGATCGACGCGATTGGGGGATAGTGCCAATGGGAGGAATAATTTTAGCAAGAATGAATCTTCAATCTTATCAATCAAGAAATTACCTACTTTGACGATGTGTCAAATTAGTGTTGGAGACGATAATCATATGTCAGTTCATAATCAATTAGCACACGTGGTCACCGCACAACATGTCCACCTGGATTCCCGGTGTCAAGTTGCCTCTTCACAAACTCTCACCGATGGTGAACGGCTGAGAAAGAAGCAAAGTCTTGGGGTATCCTTGAGCTCAAGGAGAAGCTTCAAGCCTTCAACCATGTCTTTCTCTCTCATTGAAACATGTAGAAAGAGAAAAAGATGGCCCAGAATTTTCGGGTTTCACTCTTTCGCCGACCCTGGTTGCCCCATCAGCCCAATTGGACCTTTCAGAGATAACATTCGTCTCTTTCTTCAAGAATGCGGAGAGCTCGAAGAATACCACATCCAGGGCATGCCCCTATGGTGTACCCTTCTTATTCACGAGAAGTCGAACTTGATGACCCCTCTTTACACCATTGAAGAGAACGTCTACCACACTACGCACCCCTTCTGTGACCATTGCCGATGTGCAGGCTGGAGCGGCCATTTTGTATCTAAGAGAAGGTACCATTTCATAATCCCCGCCGATAATAAACCGTTGGATGAAGGTTTTCTTGATAACCAAAGCCATCTCTTGCATGGGATGATTCATTGTAATGGGTATGGCCATTTGCTCTGTATCAATGGCATTGAAGGGGGCTCCAAATTCCTCAGTGGCCGAGAAATCATGGATCTGTGGGACAGAATCTGTACTAATCTTCGAACAAGGAAAATCGCAGTTGAAGATGCGTCAAAGAAGCGTTCAATGGATCTTCGCCTACTTCATGGAGTTGCTTATGGCCATTCTTGGTTTGGTAGGTGGGGTTACAGATTTTGTCGTGGAAGCTTTGGAGTGACAGAGCACAATTACCATTTAGCAATCGAATTGCTAAGTTCGTTAGAGCTTGATGAGGTCGTTCAATATTTTAGTAAGACAATTTGCCATAAAGAAATCAAACAAATAATCCGCCATTACAGAGACATGAGTGAAACCCAGTTGATTACAATCAAGGATCTTCTCAAGTTTATGCTTACCGTCAAGTCTCGTGCTCCTCCCCCACCCAAGAAAATAGTTGTCAATTTCAATGTTCCTCCTTCTTCAGCTTTTAGTTCAAGAAACCCAACAAGAAATGCAATATCAAGCAAACCGAATCCAGTGAAGGAAAAATCTGTGAGGTACAAAAGGTTCAGTTCTGCAGTGGCTAATATGGACAGCAGGTGGCCTGCAAGACGACTAGAATACGCAGCCCAAGTGATTGTAGATGCATTGAAAGAGAACAAGGCAAATAGTTCAGGTTCCGGTGGGATGACCAGGCAGGATGTGAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTGCTGGATTATGTGTTGAAATCACTGAACAATATGATTGTTGGAAACTACGTTGTTCGTCGCATGGTGAATCCGACAACTCGAATCCTAGAATATAATATTCATGAGTTGGGAAATGGGTTTAAAGCCCCTGAACCAGAGCCTGAGCTAAAGGTTCTAGCGGAGCCTGCAGCAGAGTCAGATCAAATGCCTGGAATTGATGTTTACAGTGATGTAGTTTATCTGTACAAGAATGTCCTACTGGGTTATCCAGATTCAGAACCAGTGGACTTGGCGGTTCAAACAATTCTGGACAGTAGGCATTTTGTGAAGGAGTGGACATTAATTGATGAAATAGAGCAAGTTTTGACATTCATATGCCGCTTGAAACTCAACTTTGTTGATATTAAATCAGAGTTGAACAAGGAAGTACCCCCAGGTGAGATTGTTATGGTTCCACTGCATGCAACGGTTGGAGACTTGAAGCATGCAGCTGAGACTGCTCTGAGGGACACTTATTGCATTGCAGAGAGAGTTATAGTGGTAGAGATTGCAGAGTTGGTGGGAGTGAGTGATGAGGAGGTGCTTTTTGGAGTGGTGGAGTCAGGTGCGGATTTGTGTGTGAGGGGAATTGGTGTAGATTTGGATACTCCATTGAAGTATCAGGGAGGAGCAGACAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGCGAGAGAATGGTGGCATGCGACATTTGTGAGGTGTGGCAGCACACACGGTGTTGTGGGATAGATGACTCAGAGACGGTGCCACCACTGTTTGTGTGCTCTGGGTGTTGTGATTCACTTGTGCCCCCAAGGATTGAATCTGCCTTCAGCAACAATAGCATGGACTGTGCTGATGATTTTCTAATTTCCCCAGAGCCTAATCCCTTGCTAGAGTTTGGATATGGGTACTGA 2424 0.4464 MNYRGCILSSLHRSTRLGDSANGRNNFSKNESSILSIKKLPTLTMCQISVGDDNHMSVHNQLAHVVTAQHVHLDSRCQVASSQTLTDGERLRKKQSLGVSLSSRRSFKPSTMSFSLIETCRKRKRWPRIFGFHSFADPGCPISPIGPFRDNIRLFLQECGELEEYHIQGMPLWCTLLIHEKSNLMTPLYTIEENVYHTTHPFCDHCRCAGWSGHFVSKRRYHFIIPADNKPLDEGFLDNQSHLLHGMIHCNGYGHLLCINGIEGGSKFLSGREIMDLWDRICTNLRTRKIAVEDASKKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEHNYHLAIELLSSLELDEVVQYFSKTICHKEIKQIIRHYRDMSETQLITIKDLLKFMLTVKSRAPPPPKKIVVNFNVPPSSAFSSRNPTRNAISSKPNPVKEKSVRYKRFSSAVANMDSRWPARRLEYAAQVIVDALKENKANSSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNMIVGNYVVRRMVNPTTRILEYNIHELGNGFKAPEPEPELKVLAEPAAESDQMPGIDVYSDVVYLYKNVLLGYPDSEPVDLAVQTILDSRHFVKEWTLIDEIEQVLTFICRLKLNFVDIKSELNKEVPPGEIVMVPLHATVGDLKHAAETALRDTYCIAERVIVVEIAELVGVSDEEVLFGVVESGADLCVRGIGVDLDTPLKYQGGADNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESAFSNNSMDCADDFLISPEPNPLLEFGYGY 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2078 807 ProSitePatterns Zinc finger PHD-type signature. 723 767 IPR019786 -
Dere04g2078 807 SMART PHD_3 722 768 IPR001965 -
Dere04g2078 807 SUPERFAMILY FYVE/PHD zinc finger 715 773 IPR011011 -
Dere04g2078 807 CDD PHD_MMD1_like 723 767 - -
Dere04g2078 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 771 IPR013083 -
Dere04g2078 807 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 121 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2078 Dere-ChrDere04 23775149 23779269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2078 121 773 PHD Transcription Factor Family AT5G22260 33.239 1.54e-119 374