Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2076 ATGACCCGAAAGAAGGTGAAGCTGGCATTCATAGCCAACGACTCAGCGAGAAAAGCAACGTACAAGAAAAGAAAGAAGGGTTTCATAAAGAAGATAGACGAACTCACCACTCTCTGCGGGATCGAGGCCTGTGCTATTGTGTACAGTCCGTACGATTCTCAGCCGGAGGTATGGCCGTCGGCGTTCGGGGTCCAACGCGTGCTGTCCAAGTTCAGGAGAATGCCGGAGTTGGAGCAGAGCAAAAAGATGGTGAACCAGGAGGGATTTCTGAAGCAGAGGATCCTGAAAGCCAAAGAGCAAGTGAATAAGCTGAGGAAGGAGAATAGGGAGAAGGAGATGACGCAGATCATGTACCAGTACCTCAGTGCTGGGAAGGTTCTGCACAACATGACCACGATTGATCTCAACGATCTGGCGTGGCAGATCGAGCAGAACCTGAAGGACGCCAATCGGAGGATTGAGGTGCTGGACAAGAGGGCTCAGAGCCAGAGGGCGGCGGATGCGGCGGCGACGGCAGCTGCGGATGCGGCGGCAGCGAGGAGCAGAGGGAAGGCGAAGTTGGAGCAGGTGGATAGGATGGAGATGAACGAGAACGTCATGCCGAAGCAGCAGTGGCTTACGGATTTGATGAGTGATGGTGGGGACGAAACGATGCCGTTTGGAGATGTGAATCATCCAAATGCATTTTGGCATGGTCATTATCTCCCATGA 711 0.5331 MTRKKVKLAFIANDSARKATYKKRKKGFIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSAFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQVNKLRKENREKEMTQIMYQYLSAGKVLHNMTTIDLNDLAWQIEQNLKDANRRIEVLDKRAQSQRAADAAATAAADAAAARSRGKAKLEQVDRMEMNENVMPKQQWLTDLMSDGGDETMPFGDVNHPNAFWHGHYLP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2076 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Dere04g2076 236 PANTHER MADS BOX PROTEIN 3 153 - -
Dere04g2076 236 Gene3D - 13 125 IPR036879 GO:0003677|GO:0046983
Dere04g2076 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Dere04g2076 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere04g2076 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere04g2076 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere04g2076 236 Coils Coil 87 114 - -
Dere04g2076 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g2076 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g2076 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g2076 236 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Dere04g2076 236 Coils Coil 139 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2076 Dere-ChrDere04 23766435 23767145 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2076 1 176 Type I MADS-box Gene Family AT5G48670 59.091 6.14e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere04g2076 SRF-TF 8.4e-16 No_clan