Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2075 ATGTTCACAGGCGTCGGTGCTGTCTCTGCAACTCTTGCTTCGAAAATGACCCGAAAGAAGGTGAAGCTGGCATTCATAACCAACGACTCAGCGAGAAAAGCAACGTACAAGAAAAGAAAGAAGGGTTTTATAAAGAAGATAGATGAACTCACCACTCTCTGTGGGATCGAGGCCTGTGCTATTGTGTACAGTCCGTACGATTCTCAGCCGGAGGTATGGCCGTCGGCGTTCGGGGTCCAACGCGTGCTGTCAAAGTTCCGGAGAATGCCGGAGTTGGAGCAGAGCAAAAAGATGGTGAACCAGGAGGGCTTCCTGAAGCAGAGGATCCTGAAAGCCAAAGAGCAAGTGAATAAGCTGAGGAAGGAGAATAGGGAGAAGGAGATGACGCAGATCATGTACCAGTACCTCAGTGCAGGGAAGGTTCTGCACAACATGACCACGATTGATCTCAACGATCTGGCGTGGCTGATCGAGCAGAACCTGAAGGACGCCAATCGGAGGATTGAGGTGCTGGACAAGAGGGCTCAGAGCCAGAGGGCGGCCGAGGCTGCGACGATGGCAGAGGCGGATGTGGCGGCGGCGAGGAGCAGAGGCAAGGCGAAGGTGGAGCAGGTGGATGGGATGGAGATGAACGAGAACGTTACGCCGAAGCAGCAGTGGCTTACGTATTTGATGAGTGATGGTGGGGACGAAACGATGCCGTTTGGAGATGTAAATCATCCAAATGCATTTTGGCATGGTCATTATCTCCCATGA 756 0.5265 MFTGVGAVSATLASKMTRKKVKLAFITNDSARKATYKKRKKGFIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSAFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQVNKLRKENREKEMTQIMYQYLSAGKVLHNMTTIDLNDLAWLIEQNLKDANRRIEVLDKRAQSQRAAEAATMAEADVAAARSRGKAKVEQVDGMEMNENVTPKQQWLTYLMSDGGDETMPFGDVNHPNAFWHGHYLP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2075 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 66 IPR002100 GO:0003677|GO:0046983
Dere04g2075 251 Coils Coil 102 129 - -
Dere04g2075 251 PANTHER MADS BOX PROTEIN 18 168 - -
Dere04g2075 251 Gene3D - 28 111 IPR036879 GO:0003677|GO:0046983
Dere04g2075 251 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Dere04g2075 251 FunFam agamous-like MADS-box protein AGL80 28 112 - -
Dere04g2075 251 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Dere04g2075 251 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Dere04g2075 251 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Dere04g2075 251 SUPERFAMILY SRF-like 17 110 IPR036879 GO:0003677|GO:0046983
Dere04g2075 251 Coils Coil 161 181 - -
Dere04g2075 251 CDD MADS_SRF_like 17 100 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere04g2075 251 ProSiteProfiles MADS-box domain profile. 16 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2075 Dere-ChrDere04 23747428 23749427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2075 16 189 Type I MADS-box Gene Family AT5G48670 60.345 1.83e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere04g2075 SRF-TF 5.6e-16 No_clan